Biological nitrogen (N) fixation plays an important role in terrestrial N cycling and represents a key driver of terrestrial net primary productivity (NPP). Despite the importance of N fixation
ECOSs – Published Work
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Contrasted effects of temperature during defoliation vs. refoliation periods on the infection of rubber powdery mildew (Oidium heveae) in Xishuangbanna, China
Rubber powdery mildew caused by the foliar fungi Oidium heveae is one of the main diseases affecting rubber plantations (Hevea brasiliensis) worldwide. It is particularly serious in sub-optimal growing
Differences in the rhizosphere effects among trees, shrubs and herbs in three subtropical plantations and their seasonal variations
Unique soil properties in rhizosphere can affect plant growth and biogeochemical cycles of ecosystems. While rhizosphere has been widely investigated, little is known about differences in the rhizosphere effect
Patterns of Ecosystem Structure and Wildfire Carbon Combustion Across Six Ecoregions of the North American Boreal Forest
Increases in fire frequency, extent, and severity are expected to strongly impact the structure and function of boreal forest ecosystems. An important function of the boreal forest is its
Fuel availability not fire weather controls boreal wildfire severity and carbon emissions
Carbon (C) emissions from wildfires are a key terrestrial–atmosphere interaction that influences global atmospheric composition and climate. Positive feedbacks between climate warming and boreal wildfires are predicted based on
Temporal controls on crown nonstructural carbohydrates in southwestern US tree species
In trees, large uncertainties remain in how nonstructural carbohydrates (NSCs) respond to variation in water availability in natural, intact ecosystems. Variation in NSC pools reflects temporal fluctuations in supply
New soil carbon sequestration with nitrogen enrichment: a meta-analysis
Through agriculture and industry, humans are increasing the deposition and availability of nitrogen (N) in ecosystems worldwide. Carbon (C) isotope tracers provide useful insights into soil C dynamics, as
How close are we to the temperature tipping point of the terrestrial biosphere?
The temperature dependence of global photosynthesis and respiration determine land carbon sink strength. While the land sink currently mitigates ~30% of anthropogenic carbon emissions, it is unclear whether this
Wildfire combustion and carbon stocks in the southern Canadian boreal forest: Implications for a warming world
Boreal wildfires are increasing in intensity, extent, and frequency, potentially intensifying carbon emissions and transitioning the region from a globally significant carbon sink to a source. The productive southern
Spatial variations in terrestrial net ecosystem productivity and its local indicators
Multiple lines of evidence have demonstrated the persistence of global land carbon (C) sink during the past several decades. However, both annual net ecosystem productivity (NEP) and its inter-annual
A spatial concordance correlation coefficient with an application to image analysis
In this work we define a spatial concordance coefficient for second-order stationary processes. This problem has been widely addressed in a non-spatial context, but here we consider a coefficient
Host Identity as a Driver of Moss-Associated N2 Fixation Rates in Alaska
Moss-associated N2 fixation provides a substantial but heterogeneous input of new N to nutrient-limited ecosystems at high latitudes. In spite of the broad diversity of mosses found in boreal
Effects of experimental nitrogen enrichment on soil properties and litter decomposition in a Neotropical savanna
The amount of reactive nitrogen has more than doubled in terrestrial ecosystems due to human activities such fertiliser application that is predicted to increase dramatically in coming decades. We
The Influence of Leaf Type on Carbon and Nitrogen Assimilation by Aquatic Invertebrate Communities: A New Perspective on Trophic Efficiency
Despite abounding evidence that leaf litter traits can predict decomposition rate, the way these traits influence trophic efficiency and element transfer to higher trophic levels is not resolved. Here,
Seasonal variation in the canopy color of temperate evergreen conifer forests
Evergreen conifer forests are the most prevalent land cover type in North America. Seasonal changes in the color of evergreen forest canopies have been documented with near-surface remote sensing,
Decomposability of soil organic matter over time: the Soil Incubation Database (SIDb, version 1.0) and guidance for incubation procedures
The magnitude of carbon (C) loss to the atmosphere via microbial decomposition is a function of the amount of C stored in soils, the quality of the organic matter,
A dynamic disequilibrium hypothesis for terrestrial carbon cycle
The dynamic equilibrium of mass and energy movement in ecosystems is an important basis for the Earth system to nurture and maintain biodiversity. Since the Industrial Revolution, human activities
Meta-analysis of the impacts of global change factors on soil microbial diversity and functionality
Biodiversity on the Earth is changing at an unprecedented rate due to a variety of global change factors (GCFs). However, the effects of GCFs on microbial diversity is unclear
COSORE: A community database for continuous soil respiration and other soil-atmosphere greenhouse gas flux data
Globally, soils store two to three times as much carbon as currently resides in the atmosphere, and it is critical to understand how soil greenhouse gas (GHG) emissions and
Fire characteristics and environmental conditions shape plant communities via regeneration strategy
Climate change is altering disturbance regimes outside historical norms, which can impact biodiversity by selecting for plants with particular traits. The relative impact of disturbance characteristics on plant traits
Metagenomes and Metatranscriptomes of a Glucose-Amended Agricultural Soil
The addition of glucose to soil has long been used to study the metabolic activity of microbes in soil; however, the response of the microbial ecophysiology remains poorly characterized.
Chemical and mechanical control of the invasive shrub Cytisus scoparius in forest clearings in western Washington, USA
We conducted a large-scale, multiple-year study in harvested areas of Douglas-fir (Pseudotsuga menziesii [Mirbel] Franco) forests in western Washington, examining the effectiveness of control methods on the widespread invasive
Substrate stoichiometry determines nitrogen fixation throughout succession in southern Chinese forests
The traditional view holds that biological nitrogen (N) fixation often peaks in early- or mid-successional ecosystems and declines throughout succession based on the hypothesis that soil N richness and/or
Soil Water Availability Drives Changes in Community Traits Along a Hydrothermal Gradient in Loess Plateau Grasslands
Plant functional traits can be used to predict ecosystem responses to climate gradients, yet precipitation explains very little variation for most traits. Soil water availability directly influences plant water
The fertilization effect of CO2 on a mature forest
Will mature forests absorb enough carbon from the atmosphere to mitigate climate change as levels of carbon dioxide increase? An experiment in a eucalyptus forest provides fresh evidence.
Plant traits in influencing soil moisture in semiarid grasslands of the Loess Plateau, China
Large-scale vegetation restoration projects pose threats to water resource security in water-limited regions. Thus, the quantification of how vegetation cover affects soil moisture is of key importance to support
Exotic Spartina alterniflora Loisel. Invasion significantly shifts soil bacterial communities with the successional gradient of saltmarsh in eastern China
The effects of invasive plants on soil carbon (C) and nitrogen (N) cycling are widely documented, while the mechanisms of their influences on the microbial ecology of soil remain
13C analysis of fatty acid fragments by gas chromatography mass spectrometry for metabolic flux analysis
When multiple metabolic pathways lead to the same product, compound-specific isotope analysis may not provide enough information to quantify the activities of the contributing pathways. Instead, identification of where
Climate and vegetation structure shape ant communities along elevational gradients on the Colorado Plateau
Terrestrial animal communities are largely shaped by vegetation and climate. With climate also shaping vegetation, can we attribute animal patterns solely to climate? Our study observes ant community changes
Carbon release through abrupt permafrost thaw
The permafrost zone is expected to be a substantial carbon source to the atmosphere, yet large-scale models currently only simulate gradual changes in seasonally thawed soil. Abrupt thaw will
Author Correction: Nitrogen and phosphorus constrain the CO2 fertilization of global plant biomass
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
Winter warming in Alaska accelerates lignin decomposition contributed by Proteobacteria
In a warmer world, microbial decomposition of previously frozen organic carbon (C) is one of the most likely positive climate feedbacks of permafrost regions to the atmosphere. However, mechanistic
Measurement error and resolution in quantitative stable isotope probing: implications for experimental design
Quantitative stable isotope probing (qSIP) estimates the degree of incorporation of an isotope tracer into nucleic acids of metabolically active organisms and can be applied to microorganisms growing in
Where resource-acquisitive species are located: the role of habitat heterogeneity
Rising temperatures with increased drought pose two challenges for management of future biodiversity. First, are the most vulnerable species concentrated in specific regions and habitats? Second, where can landscape
Modeling suggests fossil fuel emissions have been driving increased land carbon uptake since the turn of the 20th Century
Terrestrial vegetation removes CO2 from the atmosphere; an important climate regulation service that slows global warming. This 119 Pg C per annum transfer of CO2 into plants—gross primary productivity
Atmosphere-soil Interactions govern ecosystem flux sensitivity to environmental Conditions in semiarid woody ecosystems over varying timescales
Water and CO2 flux responses (e.g., evapotranspiration [ET] and net ecosystem exchange [NEE]) to environmental conditions can provide insights into how climate change will affect the terrestrial water and
Opposing effects of bacterial endophytes on biomass allocation of a wild donor and agricultural recipient
Root endophytes are a promising tool for increasing plant growth, but it is unclear whether they perform consistently across plant hosts. We characterized the blue grama (Bouteloua gracilis) root
Carbon thaw rate doubles when accounting for subsidence in a permafrost warming experiment
Permafrost thaw is typically measured with active layer thickness, or the maximum seasonal thaw measured from the ground surface. However, previous work has shown that this measurement alone fails
Understanding the continuous phenological development at daily time step with a Bayesian hierarchical space-time model: impacts of climate change and extreme weather events
The impacts of climate change and extreme weather events (e.g. frost-, heat-, drought-, and heavy rainfall events) on the continuous phenological development over the entire seasonal cycle remained poorly
Lower-than-expected CH4 emissions from rice paddies with rising CO2 concentrations
Elevated atmospheric CO2 (eCO2) generally increases carbon input in rice paddy soils and stimulates the growth of methane-producing microorganisms. Therefore, eCO2 is widely expected to increase methane (CH4) emissions
Inconsistent diversity patterns of soil fungi and woody plants among habitat types in a karst broadleaf forest
The diversity patterns of macroorganisms (i.e., plants) among different habitats have been well documented, however, those of microorganisms (i.e., fungi) as well as the relationships between them are still
Frequent burning causes large losses of carbon from deep soil layers in a temperate savanna
Fire activity is changing dramatically across the globe, with uncertain effects on ecosystem processes, especially below-ground. Fire-driven losses of soil carbon (C) are often assumed to occur primarily in
Comparing traditional and Bayesian approaches to ecological meta-analysis
Despite the wide application of meta-analysis in ecology, some of the traditional methods used for meta-analysis may not perform well given the type of data characteristic of ecological meta-analyses.
Glucose triggers strong taxon-specific responses in microbial growth and activity: insights from DNA and RNA qSIP
Growth of soil microorganisms is often described as carbon limited, and adding labile carbon to soil often results in a transient and large increase in respiration. In contrast, soil
Urban warming advances spring phenology but reduces the response of phenology to temperature in the conterminous United States
Cities and their associated urban heat islands are ideal natural laboratories for evaluating the response of plant phenology to warming conditions. In this study, we demonstrate that the satellite-derived
Dynamics of carbon, nitrogen, and phosphorus stocks and stoichiometry resulting from conversion of primary broadleaf forest to plantation and secondary forest in subtropical China
Large-scale primary native broadleaf forests (BF) have been converted to secondary forests (SF) and plantation forests (PF) in subtropical China over the past decades. However, how and what magnitude
The soil priming effect: Consistent across ecosystems, elusive mechanisms
Organic matter input to soils can accelerate the decomposition of native soil carbon (C), a process called the priming effect. Priming is ubiquitous and exhibits some consistent patterns, but
Experimental assessment of tree canopy and leaf litter controls on the microbiome and nitrogen fixation rates of two boreal mosses
Nitrogen (N2)-fixing moss microbial communities play key roles in nitrogen cycling of boreal forests. Forest type and leaf litter inputs regulate moss abundance, but how they control moss microbiomes
Global meta-analysis shows pervasive phosphorus limitation of aboveground plant production in natural terrestrial ecosystems
Phosphorus (P) limitation of aboveground plant production is usually assumed to occur in tropical regions but rarely elsewhere. Here we report that such P limitation is more widespread and
Mycobiont contribution to tundra plant acquisition of permafrost-derived nitrogen
As Arctic soils warm, thawed permafrost releases nitrogen (N) that could stimulate plant productivity and thus offset soil carbon losses from tundra ecosystems. Although mycorrhizal fungi could facilitate plant
Soil microbial biomass increases along elevational gradients in the tropics and subtropics but not elsewhere
Our aim is to use elevational gradients to quantify the relationship between temperature and ecosystem functioning. Ecosystem functions such as decomposition, nutrient cycling and carbon storage are linked with
Non-structural carbohydrate dynamics associated with antecedent stem water potential and air temperature in a dominant desert shrub
Non-structural carbohydrates (NSCs) are necessary for plant growth and affected by plant water status, but the temporal dynamics of water stress impacts on NSC are not well understood. We
Edaphic and microbial determinants of the residence times of active and slow C pools on the Tibetan Plateau
One major source of uncertainties in the estimation of soil organic carbon (SOC) dynamics is carbon (C) residence time, an important parameter in terrestrial ecosystem C cycling models. To
Warming-induced permafrost thaw exacerbates tundra soil carbon decomposition mediated by microbial community
It is well-known that global warming has effects on high-latitude tundra underlain with permafrost. This leads to a severe concern that decomposition of soil organic carbon (SOC) previously stored
Integrating the evidence for a terrestrial carbon sink caused by increasing atmospheric CO2
Atmospheric carbon dioxide concentration ([CO2]) is increasing, which increases leaf-scale photosynthesis and intrinsic water-use efficiency. These direct responses have the potential to increase plant growth, vegetation biomass, and soil
Soil carbon loss with warming: New evidence from carbon-degrading enzymes
Climate warming affects soil carbon (C) dynamics, with possible serious consequences for soil C stocks and atmospheric CO2 concentrations. However, the mechanisms underlying changes in soil C storage are
Long-term nitrogen loading alleviates phosphorus limitation in terrestrial ecosystems
Increased human-derived nitrogen (N) deposition to terrestrial ecosystems has resulted in widespread phosphorus (P) limitation of net primary productivity. However, it remains unclear if and how N-induced P limitation
Global warming and shifts in cropping systems together reduce China’s rice production
Climate warming is widely expected to affect rice yields, but results are equivocal and variation in rice cropping systems and climatic conditions complicates country-scale yield assessments. Here we show,
The spatial patterns of litter turnover time in Chinese terrestrial ecosystems
The feedback between plant, soil and climate is partly determined by plant litter turnover time, which is influenced by climate, litter quality and soil properties. However, the spatial patterns
Associations between riparian plant morphological guilds and fluvial sediment dynamics along the regulated Colorado River in Grand Canyon
Effects of riparian vegetation on fluvial sediment dynamics depend on morphological traits of the constituent species. Determining the effects of different morphological guilds on sedimentation rates, as influenced by
A new perspective on ecological prediction reveals limits to climate adaptation in a temperate tree species
Forests absorb a large fraction of anthropogenic CO2 emission, but their ability to continue to act as a sink under climate change depends in part on plant species undergoing
Taxon-specific microbial growth and mortality patterns reveal distinct temporal population responses to rewetting in a California grassland soil
Microbial activity increases after rewetting dry soil, resulting in a pulse of carbon mineralization and nutrient availability. The biogeochemical responses to wet-up are reasonably well understood and known to
The right trait in the right place at the right time: Matching traits to environment improves restoration outcomes
The challenges of restoration in dryland ecosystems are growing due to a rise in anthropogenic disturbance and increasing aridity. Plant functional traits are often used to predict plant performance
Global meta-analysis shows pervasive phosphorus limitation of aboveground plant production in natural terrestrial ecosystems
Plants are thought to be limited by phosphorus (P) especially in tropical regions. Here, Hou et al. report a meta-analysis of P fertilization experiments to show widespread P limitation
The inhibitory effects of nitrogen deposition on asymbiotic nitrogen fixation are divergent between a tropical and a temperate forest
Asymbiotic nitrogen (N) fixation (ANF) is an important source of N in pristine forests and is predicted to decrease with N deposition. Previous studies revealing N fixation in response
Substrate stoichiometry determines nitrogen fixation throughout succession in southern Chinese forests
The traditional view holds that biological nitrogen (N) fixation often peaks in early- or mid-successional ecosystems and declines throughout succession based on the hypothesis that soil N richness and/or
Snowmelt and early to mid-growing season water availability augment tree growth during rapid warming in southern Asian boreal forests
Boreal forests are facing profound changes in their growth environment, including warming-induced water deficits, extended growing seasons, accelerated snowmelt, and permafrost thaw. The influence of warming on trees varies
Soil water availability drives changes in community traits along a hydrothermal gradient in Loess Plateau Grasslands
Plant functional traits can be used to predict ecosystem responses to climate gradients, yet precipitation explains very little variation for most traits. Soil water availability directly influences plant water
Leaf litter traits predominantly control litter decomposition in streams worldwide
Aim Leaf litter decomposition in freshwater ecosystems is a vital process linking ecosystem nutrient cycling, energy transfer and trophic interactions. In comparison to terrestrial ecosystems, in which researchers find
Soil fungal communities vary with invasion by the exotic Spartina alternifolia Loisel. in coastal salt marshes of eastern China
Soil fungal communities play a critical role in ecosystem carbon (C) and nitrogen (N) cycling. Although the effect of plant invasions on ecosystem C and N cycling is well
Significant alterations in soil fungal communities along a chronosequence of Spartina alterniflora invasion in a Chinese Yellow Sea coastal wetland
Plant invasion typically alters the microbial communities of soils, which affects ecosystem carbon (C) and nitrogen (N) cycles. The responses of the soil fungal communities to plant invasion along
Straw incorporation influences soil organic carbon sequestration, greenhouse gas emission, and crop yields in a Chinese rice (Oryza sativa L.) –wheat (Triticum aestivum L.) cropping system
Crop straw management plays important roles in sustainable agriculture and environmental protection. Straw incorporation has multiple influences on soil organic carbon (SOC) sequestration, greenhouse gas (GHG) emissions, and crop
A meta-analysis of 1,119 manipulative experiments on terrestrial carbon-cycling responses to global change
Direct quantification of terrestrial biosphere responses to global change is crucial for projections of future climate change in Earth system models. Here, we synthesized ecosystem carbon-cycling data from 1,119
Direct observation of permafrost degradation and rapid soil carbon loss in tundra
Evidence suggests that 5–15% of the vast pool of soil carbon stored in northern permafrost ecosystems could be emitted as greenhouse gases by 2100 under the current path of
Large loss of CO2 in winter observed across the northern permafrost region
Recent warming in the Arctic, which has been amplified during the winter1–3, greatly enhances microbial decomposition of soil organic matter and subsequent release of carbon dioxide (CO2)4. However, the
Field-experiment constraints on the enhancement of the terrestrial carbon sink by CO2 fertilization
Clarifying how increased atmospheric CO2 concentration (eCO2) contributes to accelerated land carbon sequestration remains important since this process is the largest negative feedback in the coupled carbon–climate system. Here,
Global change effects on plant communities are magnified by time and the number of global change factors imposed
Accurate prediction of community responses to global change drivers (GCDs) is critical given the effects of biodiversity on ecosystem services. There is consensus that human activities are driving species
Direct seeding for rice production increased soil erosion and phosphorus runoff losses in subtropical China
Estimating soil erosion and nutrient losses from surface runoff in paddy fields is essential for the assessment of sustainable rice (Oryza sativa L.) production and water quality protection. Different
Increasing wildfires threaten historic carbon sink of boreal forest soils
Boreal forest fires emit large amounts of carbon into the atmosphere primarily through the combustion of soil organic matter1–3. During each fire, a portion of this soil beneath the
Nitrogen and phosphorus constrain the CO2 fertilization of global plant biomass
Elevated CO2 (eCO2) experiments provide critical information to quantify the effects of rising CO2 on vegetation1–6. Many eCO2 experiments suggest that nutrient limitations modulate the local magnitude of the
Thermal imaging in plant and ecosystem ecology: Applications and challenges
Temperature is a primary environmental control on ecological systems and processes at a range of spatial and temporal scales. The surface temperature of organisms is often more relevant for
Water scaling of ecosystem carbon cycle feedback to climate warming
It has been well established by field experiments that warming stimulates either net ecosystem carbon uptake or release, leading to negative or positive carbon cycle–climate change feedback, respectively. This
Quantitative stable isotope probing with H218O to measure taxon-specific microbial growth
Microorganisms in soil assimilate, transform, and mineralize soil C to support growth. There are an estimated 2.6 × 1029 microbial cells containing 26 Pg C in soils worldwide. Consequently,
Climate change decreases the cooling effect from postfire albedo in boreal North America
Fire is a primary disturbance in boreal forests and generates both positive and negative climate forcings. The influence of fire on surface albedo is a predominantly negative forcing in
Glucose triggers strong taxon-specific responses in microbial growth and activity: insights from DNA and RNA qSIP
Growth of soil microorganisms is often described as carbon limited, and adding labile carbon to soil often results in a transient and large increase in respiration. In contrast, soil
Leguminous cover crop Astragalus sinicus enhances grain yields and nitrogen use efficiency through increased tillering in an intensive double-cropping rice system in southern China
Chinese milk vetch (Astragalus sinicus L., vetch), a leguminous winter cover crop, has been widely adopted by farmers in southern China to boost yield of the succeeding rice crop.
Revisiting the fates of dead leaves that fall into streams
As terrestrial leaf litter decomposes in rivers, its constituent elements follow multiple pathways. Carbon leached as dissolved organic matter can be quickly taken up by microbes, then respired before
Ecological memory of daily carbon exchange across the globe and its importance in drylands
How do antecedent (past) conditions influence land-carbon dynamics after those conditions no longer persist? In particular, quantifying such memory effects associated with the influence of past environmental (exogenous) and
The soil priming effect: Consistent across ecosystems, elusive mechanisms
Organic matter input to soils can accelerate the decomposition of native soil carbon (C), a process called the priming effect. Priming is ubiquitous and exhibits some consistent patterns, but
Effects of human population density on the pattern of terrestrial nature reserves in China
An increasing number of studies showed that coverage of existing protected areas is not enough to protect biodiversity. However, to what extent and how human population density influence the
Reproductive limitation mediates the response of white spruce (Picea glauca) to climate warming across the forest–tundra ecotone
Shifts in the extent of the boreal forest during past warm intervals and correlations between climate and the position of the forest–tundra ecotone suggest that recent temperature increases will
Experimental warming amplified opposite impacts of drought vs. wet extremes on ecosystem carbon cycle in a tallgrass prairie
Climate warming is leading to greater precipitation variability, resulting in increased frequency and intensity of both drought and wet extremes. However, how these extreme events interact with climate warming
Responses of tundra soil microbial communities to half a decade of experimental warming at two critical depths
Ongoing permafrost thaw is expected to stimulate microbial release of greenhouse gases, threatening to further exacerbate climate change (cause positive feedback). In this study, a unique field warming experiment
Quantifying soil phosphorus dynamics: A data assimilation approach
The dynamics of soil phosphorus (P) control its bioavailability. Yet it remains a challenge to quantify soil P dynamics. Here we developed a soil P dynamics (SPD) model. We
Gaps and hotspots in the state of knowledge of pinyon-juniper communities
Pinyon-juniper (PJ) plant communities cover a large area across North America and provide critical habitat for wildlife, biodiversity and ecosystem functions, and rich cultural resources. These communities occur across
Tundra microbial community taxa and traits predict decomposition parameters of stable, old soil organic carbon
The susceptibility of soil organic carbon (SOC) in tundra to microbial decomposition under warmer climate scenarios potentially threatens a massive positive feedback to climate change, but the underlying mechanisms
Temporal shifts in iso/anisohydry revealed from daily observations of plant water potential in a dominant desert shrub
Plant species are characterized along a spectrum of isohydry to anisohydry depending on their regulation of water potential (?), but the plasticity of hydraulic strategies is largely unknown. The
Disentangling the role of photosynthesis and stomatal conductance on rising forest water-use efficiency
Forests remove about 30% of anthropogenic CO2 emissions through photosynthesis and return almost 40% of incident precipitation back to the atmosphere via transpiration. The trade-off between photosynthesis and transpiration
On the need to consider wood formation processes in global vegetation models and a suggested approach
Dynamic global vegetation models are key tools for interpreting and forecasting the responses of terrestrial ecosystems to climatic variation and other drivers. They estimate plant growth as the outcome
Importance of tree- and species-level interactions with wildfire, climate, and soils in interior Alaska: Implications for forest change under a warming climate
The boreal zone of Alaska is dominated by interactions between disturbances, vegetation, and soils. These interactions are likely to change in the future through increasing permafrost thaw, more frequent
Data-driven ENZYme (DENZY) model represents soil organic carbon dynamics in forests impacted by nitrogen deposition
Soil microorganisms participate in almost all soil organic carbon (SOC) transformations, but they are not represented explicitly in the current generation of earth system models. This study used a
Life history traits predict colonization and extinction lags of desert plant species since the Last Glacial Maximum
Variation in life-history strategies can affect metapopulation dynamics and consequently the composition and diversity of communities. However, data sets that allow for the full range of species turnover from
Limits to growth of forest biomass carbon sink under climate change
The recovery of North American forests is likely to impact their capacity as a carbon sink. Here, Zhu et al. show a growth in aboveground biomass in various climate
GOLUM-CNP v1.0: a data-driven modeling of carbon, nitrogen and phosphorus cycles in major terrestrial biomes
Global terrestrial nitrogen (N) and phosphorus (P) cycles are coupled to the global carbon (C) cycle for net primary production (NPP), plant C allocation, and decomposition of soil organic
Sidebar 2.3. Phenology of terrestrial and freshwater primary producers
Phenology is the study of recurring events in nature and their relationships with climate. The word derives from the Greek phaínō ‘appear’ and logos ‘reason’, emphasizing the focus on
Opinion: Managing for disturbance stabilizes forest carbon
Forest ecosystems sequester approximately 12% of anthropogenic carbon emissions, and efforts to increase forest carbon uptake are central to climate change mitigation policy. Managing forests to store carbon has
Seasonal patterns of nonstructural carbohydrate reserves in four woody boreal species
Plants store nonstructural carbohydrates (NSCs), such as sugars and starch, to use as carbon and energy sources for daily maintenance and growth needs as well as during times of
Position-specific metabolic probing and metagenomics of microbial communities reveal conserved central carbon metabolic network activities at high temperatures
Temperature is a primary driver of microbial community composition and taxonomic diversity; however, it is unclear to what extent temperature affects characteristics of central carbon metabolic pathways (CCMPs). In
Snowmelt and early to mid-growing season water availability augment tree growth during rapid warming in southern Asian boreal forests
Boreal forests are facing profound changes in their growth environment, including warming-induced water deficits, extended growing seasons, accelerated snowmelt, and permafrost thaw. The influence of warming on trees varies
Should we be concerned about multiple comparisons in hierarchical Bayesian models?
Ecologists increasingly use hierarchical Bayesian (HB) models to estimate group-level parameters that vary by, for example, species, treatment level, habitat type or other factors. Group-level parameters may be compared
Evolutionary history constrains microbial traits across environmental variation
Organisms influence ecosystems, from element cycling to disturbance regimes, to trophic interactions and to energy partitioning. Microorganisms are part of this influence, and understanding their ecology in nature requires
Impacts of climate and insect herbivory on productivity and physiology of trembling aspen (Populus tremuloides) in Alaskan boreal forests
Climate change is impacting forested ecosystems worldwide, particularly in the Northern Hemisphere where warming has increased at a faster rate than the rest of the globe. As climate warms,
On the need to consider wood formation processes in global vegetation models and a suggested approach
Dynamic global vegetation models are key tools for interpreting and forecasting the responses of terrestrial ecosystems to climatic variation and other drivers. They estimate plant growth as the outcome
Contrasting responses after fires of the source components of soil respiration and ecosystem respiration
Wildfire is an important ecological disturbance that can have cascading effects on ecosystem carbon (C) fluxes. Ecosystem respiration (ER) and soil respiration (SR) account for two of the largest
Extinction debt and delayed colonization have had comparable but unique effects on plant community–climate lags since the Last Glacial Maximum
Plant communities typically exhibit lagged responses to climate change due to poorly understood effects of colonization and local extinction. Here, we quantify rates of change in mean cold tolerances,
Data extraction from digital repeat photography using xROI: An interactive framework to facilitate the process
Digital repeat photography and near-surface remote sensing have been used by environmental scientists to study environmental change for nearly a decade. However, a user-friendly, reliable, and robust platform to
Global pattern and controls of biological nitrogen fixation under nutrient enrichment: A meta-analysis
Biological nitrogen (N) fixation (BNF), an important source of N in terrestrial ecosystems, plays a critical role in terrestrial nutrient cycling and net primary productivity. Currently, large uncertainty exists
Alterations in soil bacterial community in relation to Spartina alterniflora Loisel. invasion chronosequence in the eastern Chinese coastal wetlands
In order to better understand the variations in soil bacterial community and associated drivers following plant invasion, we investigated changes in soil bacterial community along with 9-, 13-, 20-
Approaching the potential of model-data comparisons of global land carbon storage
Carbon storage dynamics in vegetation and soil are determined by the balance of carbon influx and turnover. Estimates of these opposing fluxes differ markedly among different empirical datasets and
Pile age and burn season influence fuelbed properties, combustion dynamics, fuel consumption, and charcoal formation when burning hand piles
Piling and burning is widely used to dispose of unmerchantable debris resulting from thinning in forests throughout the western United States. Quite often more piles are created than are
Axial variation of xylem conduits in the Earth’s tallest trees
Hydraulic limitations to tree height can be mitigated by widening the conducting elements toward a tree’s base. However, size limits of tracheid and vessel dimensions may constrain this compensation
Evaluating the simulated mean soil carbon transit times by Earth system models using observations
One known bias in current Earth system models (ESMs) is the underestimation of global mean soil carbon (C) transit time (τsoil), which quantifies the age of the C atoms
Long-term impacts of warming drive decomposition and accelerate the turnover of labile, not recalcitrant, carbon
Warming is altering the way soils function in ecosystems both directly by changing microbial physiology and indirectly by causing shifts in microbial community composition. Some of these warming-driven changes
Using direct phloem transport manipulation to advance understanding of carbon dynamics in forest trees
Carbon dynamics within trees are intrinsically important for physiological functioning, in particular growth and survival, as well as ecological interactions on multiple timescales. Thus, these internal dynamics play a
Global variation of soil microbial carbon-use efficiency in relation to growth temperature and substrate supply
Soil microbial carbon-use efficiency (CUE), which is defined as the ratio of growth over C uptake, is commonly assumed as a constant or estimated by a temperature-dependent function in
The expanding footprint of rapid Arctic change
Arctic land ice is melting, sea ice is decreasing, and permafrost is thawing. Changes in these Arctic elements are interconnected, and most interactions accelerate the rate of change. The
Predictive genomic traits for bacterial growth in culture versus actual growth in soil
Relationships between microbial genes and performance are often evaluated in the laboratory in pure cultures, with little validation in nature. Here, we show that genomic traits related to laboratory
Integrating camera imagery, crowdsourcing, and deep learning to improve high-frequency automated monitoring of snow at continental-to-global scales
Snow is important for local to global climate and surface hydrology, but spatial and temporal heterogeneity in the extent of snow cover make accurate, fine-scale mapping and monitoring of
Millennial-scale carbon accumulation and molecular transformation in a permafrost core from Interior Alaska
Organic carbon stored in high-latitude permafrost represents a potential positive feedback to climate warming as well as a valuable store of paleoenvironmental information. The below-freezing conditions have effectively removed
Realized ecological forecast through an interactive Ecological Platform for Assimilating Data (EcoPAD, v1.0) into models
Predicting future changes in ecosystem services is not only highly desirable but is also becoming feasible as several forces (e.g., available big data, developed data assimilation (DA) techniques, and
Climate warming accelerates temporal scaling of grassland soil microbial biodiversity
Determining the temporal scaling of biodiversity, typically described as species–time relationships (STRs), in the face of global climate change is a central issue in ecology because it is fundamental
Underestimated ecosystem carbon turnover time and sequestration under the steady state assumption: A perspective from long-term data assimilation
It is critical to accurately estimate carbon (C) turnover time as it dominates the uncertainty in ecosystem C sinks and their response to future climate change. In the absence
Phosphorus addition alters the response of soil organic carbon decomposition to nitrogen deposition in a subtropical forest
The continuous increase of nitrogen (N) deposition may exacerbate phosphorus (P) deficiency, which affects soil organic carbon (SOC) decomposition by changing microbial community characteristics in subtropical forests with highly
Wildfire severity reduces richness and alters composition of soil fungal communities in boreal forests of western Canada
Wildfire is the dominant disturbance in boreal forests and fire activity is increasing in these regions. Soil fungal communities are important for plant growth and nutrient cycling postfire but
Long-term plant community trajectories suggest divergent responses of native and non-native perennials and annuals to vegetation removal and seeding treatments
Land managers frequently apply vegetation removal and seeding treatments to restore ecosystem function following woody plant encroachment, invasive species spread, and wildfire. However, the long-term outcome of these treatments
Flux Puppy – An open-source software application and portable system design for low-cost manual measurements of CO2 and H2O fluxes
Manual chamber-based measurements of CO2 (and H2O) fluxes are important for understanding ecosystem carbon metabolism. Small opaque chambers can be used to measure leaf, stem and soil respiration. Larger
Canopy position is a stronger determinant of bacterial community composition and diversity than environmental disturbance in the phyllosphere
The effect of rain on the phyllosphere community has not been extensively explored, especially in the context of spatial variation on the impact of rain throughout the tree canopy.
Improved yield and water storage of the wheat-maize rotation system due to double-blank row mulching during the wheat stage
Mulching techniques have been widely used in dryland regions in northern China. It is necessary to develop water-saving cultivation techniques in irrigation regions in northern China to relieve water
Linkages between tree architectural designs and life-history strategies in a subtropical montane moist forest
Tree architecture is crucial to maximizing light capture, determined by carbon allocation of individual trees, and consequently characterizes species-specific growth strategies. Its variation and associated life-history strategies have been
Decadal biomass increment in early secondary succession woody ecosystems is increased by CO2 enrichment
Increasing atmospheric CO2 stimulates photosynthesis which can increase net primary production (NPP), but at longer timescales may not necessarily increase plant biomass. Here we analyse the four decade-long CO2-enrichment
Spatiotemporal sensitivity of thermal stress for monitoring canopy hydrological stress in near real-time
Monitoring drought in real-time using minimal field data is a challenge for ecosystem management and conservation. Most methods require extensive data collection and in-situ calibration and accuracy is difficult
Legacies of La Niña: North American monsoon can rescue trees from winter drought
While we often assume tree growth?climate relationships are time-invariant, impacts of climate phenomena such as the El Niño Southern Oscillation (ENSO) and the North American Monsoon (NAM) may challenge
Nitrogen and phosphorus resorption in planted forests worldwide
Nutrient resorption from senescing leaves is one of the plants’ essential nutrient conservation strategies. Parameters associated with resorption are important nutrient-cycling constraints for accurate predictions of long-term primary productivity
Antecedent soil water content and vapor pressure deficit interactively control water potential in Larrea tridentata
Plant water potential Ψ is regulated by stomatal responses to atmospheric moisture demand D and soil water availability W, but the timescales of influence and interactions between these drivers
Ectomycorrhizas and tree seedling establishment are strongly influenced by forest edge proximity but not soil inoculum
Reforestation is challenging when timber harvested areas have been degraded, invaded by nonnative species, or are of marginal suitability to begin with. Conifers form mutualistic partnerships with ectomycorrhizal fungi
Long-term warming in Alaska enlarges the diazotrophic community in deep soils
Tundra ecosystems are typically carbon (C) rich but nitrogen (N) limited. Since biological N2 fixation is the major source of biologically available N, the soil N2-fixing (i.e., diazotrophic) community
Manure acts as a better fertilizer for increasing crop yields than synthetic fertilizer does by improving soil fertility
Fertilization is an important management strategy for crop yields by mediating soil fertility. However, rare studies quantitatively assessed the interactions among fertilization, crop yields, and soil fertility. Here, data
Long-term elevated CO2 shifts composition of soil microbial communities in a Californian annual grassland, reducing growth and N utilization potentials
The continuously increasing concentration of atmospheric CO2 has considerably altered ecosystem functioning. However, few studies have examined the long-term (i.e. over a decade) effect of elevated CO2 on soil
Multiple models and experiments underscore large uncertainty in soil carbon dynamics
Soils contain more carbon than plants or the atmosphere, and sensitivities of soil organic carbon (SOC) stocks to changing climate and plant productivity are a major uncertainty in global
Warming shortens flowering seasons of tundra plant communities
Advancing phenology is one of the most visible effects of climate change on plant communities, and has been especially pronounced in temperature-limited tundra ecosystems. However, phenological responses have been
Tundra Trait Team: A database of plant traits spanning the tundra biome
The Tundra Trait Team (TTT) database includes field-based measurements of key traits related to plant form and function at multiple sites across the tundra biome. This dataset can be
Response of soil microbial communities to altered precipitation: A global synthesis
Climate change intensifies the hydrological cycle and consequently alters precipitation regimes. Accurately assessing future carbon (C) budgets depends on understanding the influence of altered precipitation on both aboveground C
Methane efflux measured by eddy covariance in Alaskan upland tundra undergoing permafrost degradation
Greenhouse gas emissions from thawing permafrost in arctic ecosystems may amplify global warming, yet estimates of the rate of carbon release, and the proportion of carbon released as methane
Ecological response to permafrost thaw and consequences for local and global ecosystem services
The Arctic may seem remote, but the unprecedented environmental changes occurring there have important consequences for global society. Of all Arctic system components, changes in permafrost (perennially frozen ground)
Glucose addition increases the magnitude and decreases the age of soil respired carbon in a long-term permafrost incubation study
Higher temperatures in northern latitudes will increase permafrost thaw and stimulate above- and belowground plant biomass growth in tundra ecosystems. Higher plant productivity increases the input of easily decomposable
mRNA, rRNA and DNA quantitative stable isotope probing with H218O indicates use of old rRNA among soil Thaumarchaeota
RNA is considered to be a short-lived molecule, indicative of cellular metabolic activity, whereas DNA is thought to turn over more slowly because living cells do not always grow
Using stable carbon isotopes of seasonal ecosystem respiration to determine permafrost carbon loss
High latitude warming and permafrost thaw will expose vast stores of deep soil organic carbon (SOC) to decomposition. Thaw also changes water movement causing either wetter or drier soil.
Leaf area index identified as a major source of variability in modeled CO2 fertilization
The concentration–carbon feedback (β), also called the CO2 fertilization effect, is a key unknown in climate–carbon-cycle projections. A better understanding of model mechanisms that govern terrestrial ecosystem responses to
Reduced carbon use efficiency and increased microbial turnover with soil warming
Global soil carbon (C) stocks are expected to decline with warming, and changes in microbial processes are key to this projection. However, warming responses of critical microbial parameters such
Drainage enhances modern soil carbon contribution but reduces old soil carbon contribution to ecosystem respiration in tundra ecosystems
Warming temperatures are likely to accelerate permafrost thaw in the Arctic, potentially leading to the release of old carbon previously stored in deep frozen soil layers. Deeper thaw depths
Limited potential of harvest index improvement to reduce methane emissions from rice paddies
Rice is a staple food for nearly half of the world’s population, but rice paddies constitute a major source of anthropogenic CH4 emissions. Root exudates from growing rice plants
Comparison of CO2 and O2 fluxes demonstrate retention of respired CO2 in tree stems from a range of tree species
The ratio of CO efflux to influx (ARQ, apparent respiratory quotient) in tree stems is expected to be 1.0 for carbohydrates, the main substrate supporting stem respiration. In previous studies of
Linking big models to big data: efficient ecosystem model calibration through Bayesian model emulation
Data-model integration plays a critical role in assessing and improving our capacity to predict ecosystem dynamics. Similarly, the ability to attach quantitative statements of uncertainty around model forecasts is
Clarifying the interpretation of carbon use efficiency in soil through methods comparison
Accurate estimates of microbial carbon use efficiency (CUE) are required to predict how global change will impact microbially-mediated ecosystem functions such as organic matter decomposition. Multiple approaches are currently
Carbon–nitrogen coupling under three schemes of model representation: a traceability analysis
The interaction between terrestrial carbon (C) and nitrogen (N) cycles has been incorporated into more and more land surface models. However, the scheme of C–N coupling differs greatly among
Standardized protocols and procedures can precisely and accurately quantify non-structural carbohydrates
Non-structural carbohydrates (NSCs), the stored products of photosynthesis, building blocks for growth and fuel for respiration, are central to plant metabolism, but their measurement is challenging. Differences in methods
Differential responses of carbon-degrading enzyme activities to warming: Implications for soil respiration
Extracellular enzymes catalyze rate-limiting steps in soil organic matter decomposition, and their activities (EEAs) play a key role in determining soil respiration (SR). Both EEAs and SR are highly
Fine Root Biomass Mediates Soil Fauna Community in Response to Nitrogen Addition in Poplar Plantations (Populus deltoids) on the East Coast of China
Soil fauna is critical for maintaining ecosystem functioning, and its community could be significantly impacted by nitrogen (N) deposition. However, our knowledge of how soil-faunal community composition responds to
Tracking seasonal rhythms of plants in diverse ecosystems with digital camera imagery
Global change is shifting the seasonality of vegetation in ecosystems around the globe. High-frequency digital camera imagery, and vegetation indices derived from that imagery, is facilitating better tracking of
Parameter calibration in global soil carbon models using surrogate-based optimization
Soil organic carbon (SOC) has a significant effect on carbon emissions and climate change. However, the current SOC prediction accuracy of most models is very low. Most evaluation studies
Temporal coupling of subsurface and surface soil CO2 fluxes: Insights from a nonsteady state model and cross-wavelet coherence analysis
Inferences about subsurface CO2 fluxes often rely on surface soil respiration (Rsoil) estimates because directly measuring subsurface microbial and root respiration (collectively, CO2 production, STotal) is difficult. To evaluate
Modeling soil CO2 production and transport with dynamic source and diffusion terms: Testing the steady-state assumption using DETECT v1.0
The flux of CO2 from the soil to the atmosphere (soil respiration, Rsoil) is a major component of the global carbon (C) cycle. Methods to measure and model Rsoil, or partition it
Plant community responses to mastication and mulching of one-seed juniper (Juniperus monosperma)
Mechanical cutting and mastication of juniper trees aims to restore grassland habitat by reducing the density of encroaching woody species. However, the associated soil disturbance may also create conduits
Soil biochemical parameters in the rhizosphere contribute more to changes in soil respiration and its components than those in the bulk soil under nitrogen application in croplands
Soil respiration (RS), which is the second largest carbon flux between the atmosphere and terrestrial ecosystems, has significant impact on atmospheric CO2 concentration and climatic dynamics. Nitrogen (N) fertilizer
Enhanced peak growth of global vegetation and its key mechanisms
The annual peak growth of vegetation is critical in characterizing the capacity of terrestrial ecosystem productivity and shaping the seasonality of atmospheric CO2 concentrations. The recent greening of global
Refinement of a theoretical trait space for North American trees via environmental filtering
We refer to a theoretical trait space (TTS) as an n-dimensional hypervolume (hypercube) characterizing the range of values and covariations among multiple functional traits, in the absence of explicit
Multidimensional trait space informed by a mechanistic model of tree growth and carbon allocation
Plant functional traits research has revealed many interesting and important patterns among morphological, physiological, and life-history traits and the environment. These are exemplified in trade-offs between groups of traits
When roads appear jaguars decline: Increased access to an Amazonian wilderness area reduces potential for jaguar conservation
Roads are a main threat to biodiversity conservation in the Amazon, in part, because roads increase access for hunters. We examine how increased landscape access by hunters may lead
Reproduction as a bottleneck to treeline advance across the circumarctic forest tundra ecotone
The fundamental niche of many species is shifting with climate change, especially in sub-arctic ecosystems with pronounced recent warming. Ongoing warming in sub-arctic regions should lessen environmental constraints on
Evaluation of land surface phenology from VIIRS data using time series of PhenoCam imagery
Land surface phenology (LSP) has been widely retrieved from time series of various satellite instruments in order to monitor climate change and ecosystem dynamics. However, any evaluation of the
Forests dominate the interannual variability of the North American carbon sink
Understanding what drives the interannual variability (IAV) of the land carbon sink is crucial for improving future predictions of this important, yet uncertain, component of the climate system. While
Glucose addition increases the magnitude and decreases the age of soil respired carbon in a long-term permafrost incubation study
Higher temperatures in northern latitudes will increase permafrost thaw and stimulate above-and belowground plant biomass growth in tundra ecosystems. Higher plant productivity increases the input of easily decomposable carbon
Using near-infrared-enabled digital repeat photography to track structural and physiological phenology in Mediterranean tree-grass ecosystems
Tree-grass ecosystems are widely distributed. However, their phenology has not yet been fully characterized. The technique of repeated digital photographs for plant phenology monitoring (hereafter referred as PhenoCam) provide
Ecosystem carbon transit versus turnover times in response to climate warming and rising atmospheric CO2 concentration
Ecosystem carbon (C) transit time is a critical diagnostic parameter to characterize land C sequestration. This parameter has different variants in the literature, including a commonly used turnover time.
Vegetation indices do not capture forest cover variation in upland Siberian larch forests
Boreal forests are changing in response to climate, with potentially important feedbacks to regional and global climate through altered carbon cycle and albedo dynamics. These feedback processes will be
Novel measurements of a fine-scale albedo: Using a commercial quadcopter to measure radiation fluxes
Remote sensing of radiative indices must balance spatially and temporally coarse satellite measurements with finer-scale, but geographically limited, in-situ surface measurements. Instruments mounted upon an Unmanned Aerial Vehicle (UAV)
Later springs green-up faster: The relation between onset and completion of green-up in deciduous forests of North America
In deciduous forests, spring leaf phenology controls the onset of numerous ecosystem functions. While most studies have focused on a single annual spring event, such as budburst, ecosystem functions
Large-scale droughts responsible for dramatic reductions of terrestrial net carbon uptake over North America in 2011 and 2012
Recently, severe droughts that occurred in North America are likely to have impacted its terrestrial carbon sink. However, process-based understanding of how meteorological conditions prior to the onset of
Antibiotic-resistant Escherichia coli from retail poultry meat with different antibiotic use claims
We sought to determine if the prevalence of antibiotic-resistant Escherichia coli differed across retail poultry products and among major production categories, including organic, “raised without antibiotics”, and conventional.
Divergent patterns of experimental and model-derived permafrost ecosystem carbon dynamics in response to Arctic warming
In the last few decades, temperatures in the Arctic have increased twice as much as the rest of the globe. As permafrost thaws in response to this warming, large
Ages and transit times as important diagnostics of model performance for predicting carbon dynamics in terrestrial vegetation models
The global carbon cycle is strongly controlled by the source/sink strength of vegetation as well as the capacity of terrestrial ecosystems to retain this carbon. These dynamics, as well
Widespread seasonal compensation effects of spring warming on northern plant productivity
Climate change is shifting the phenological cycles of plants1, thereby altering the functioning of ecosystems, which in turn induces feedbacks to the climate system2. In northern (north of 30° N)
Tree carbon allocation explains forest drought-kill and recovery patterns
The mechanisms governing tree drought mortality and recovery remain a subject of inquiry and active debate given their role in the terrestrial carbon cycle and their concomitant impact on
Accelerating rates of Arctic carbon cycling revealed by long-term atmospheric CO2 measurements
The contemporary Arctic carbon balance is uncertain, and the potential for a permafrost carbon feedback of anywhere from 50 to 200 petagrams of carbon (Schuur et al., 2015) compromises
Climate warming leads to divergent succession of grassland microbial communities
Accurate climate projections require an understanding of the effects of warming on ecological communities and the underlying mechanisms that drive them1–3. However, little is known about the effects of
A keystone microbial enzyme for nitrogen control of soil carbon storage
Agricultural and industrial activities have increased atmospheric nitrogen (N) deposition to ecosystems worldwide. N deposition can stimulate plant growth and soil carbon (C) input, enhancing soil C storage. Changes
Improving understanding of soil organic matter dynamics by triangulating theories, measurements, and models
Soil organic matter (SOM) turnover increasingly is conceptualized as a tension between accessibility to microorganisms and protection from decomposition via physical and chemical association with minerals in emerging soil
Litter identity affects assimilation of carbon and nitrogen by a shredding caddisfly
Ecologists often equate litter quality with decomposition rate. In soil and sediments, litter that is rapidly decomposed by microbes often has low concentrations of tannin and lignin and low
Successional change in species composition alters climate sensitivity of grassland productivity
Succession theory predicts altered sensitivity of ecosystem functions to disturbance (i.e., climate change) due to the temporal shift in plant community composition. However, empirical evidence in global change experiments
Model structures amplify uncertainty in predicted soil carbon responses to climate change
Large model uncertainty in projected future soil carbon (C) dynamics has been well documented. However, our understanding of the sources of this uncertainty is limited. Here we quantify the
Nutrient limitation of plant productivity in scrubby flatwoods: Does fire shift nitrogen versus phosphorus limitation?
Differences in the biogeochemistry of nitrogen (N) and phosphorus (P) lead to differential losses and inputs during and over time after fire such that fire may affect nutrient limitation
Adding depth to our understanding of nitrogen dynamics in permafrost soils
Losses of C from decomposing permafrost may be offset by increased productivity of tundra plants, but nitrogen availability partially limits plant growth in tundra ecosystems. In this soil incubation
Developing climate-smart restoration: Can plant microbiomes be hardened against heat waves?
Heat waves are increasing in frequency and intensity, presenting a challenge for the already difficult practice of ecological restoration. We investigated whether pre-heating locally sourced rhizosphere soil (inoculum) could
Quantitative stable isotope probing with H218O reveals that most bacterial taxa in soil synthesize new ribosomal RNA
Most soil bacterial taxa are thought to be dormant, or inactive, yet the extent to which they synthetize new rRNA is poorly understood. We analyzed 18O composition of RNA
Warming induced changes in soil carbon and nitrogen influence priming responses in four ecosystems
Soil contains the largest terrestrial pool of carbon (C), but how this pool will be affected by global change remains unknown. Warmer temperatures generally increase soil respiration, while additional
More replenishment than priming loss of soil organic carbon with additional carbon input
Increases in carbon (C) inputs to soil can replenish soil organic C (SOC) through various mechanisms. However, recent studies have suggested that the increased C input can also stimulate
Novel bacterial lineages associated with boreal moss species
Mosses are critical components of boreal ecosystems where they typically account for a large proportion of net primary productivity and harbour diverse bacterial communities that can be the major
Below-ground plant traits influence tundra plant acquisition of newly thawed permafrost nitrogen
The release of permafrost-derived nitrogen (N) has the potential to fertilize tundra vegetation, which in turn may stimulate productivity and thus offset carbon (C) losses from thawing permafrost. Below-ground
Evapotranspiration partitioning using an optimality-based ecohydrological model in a semiarid shrubland
Partitioning of evapotranspiration (ET) into biological component transpiration (T) and non-biological component evaporation (E) is crucial in understanding the impact of environmental change on ecosystems and water resources. However,
Divergent responses of ecosystem respiration components to livestock exclusion on the Quighai Tibetan Plateau
Grazing exclusion (GE) is an effective method for protecting degraded grasslands, and it can profoundly affect ecosystem carbon (C) cycles. Ecosystem respiration (ER), which includes both autotrophic and heterotrophic
Soil resources and element stocks in drylands to face global issues
Drylands (hyperarid, arid, semiarid, and dry subhumid ecosystems) cover almost half of Earth’s land surface and are highly vulnerable to environmental pressures. Here we provide an inventory of soil
Fuel-reduction management alters plant composition, carbon and nitrogen pools, and soil thaw in Alaskan boreal forest
Increasing wildfire activity in Alaska’s boreal forests has led to greater fuel-reduction management. Management has been implemented to reduce wildfire spread, but the ecological impacts of these practices are poorly
Ecosystem context illuminates conflicting roles of plant diversity in carbon storage
Plant diversity can increase biomass production in plot-scale studies, but applying these results to ecosystem carbon (C) storage at larger spatial and temporal scales remains problematic. Other ecosystem controls
Whole-tree nonstructural carbohydrate storage and seasonal dynamics in five temperate species
Despite the importance of nonstructural carbohydrates (NSC) for growth and survival in woody plants, we know little about whole-tree NSC storage. The conventional theory suggests that NSC reserves will
Environmental and taxonomic controls of carbon and oxygen stable isotope composition in Sphagnum across broad climatic and geographic ranges
Rain-fed peatlands are dominated by peat mosses (Sphagnum sp.), which for their growth depend on nutrients, water and CO2 uptake from the atmosphere. As the isotopic composition of carbon
Ecosystem warming extends vegetation activity but heightens vulnerability to cold temperatures
Shifts in vegetation phenology are a key example of the biological effects of climate change. However, there is substantial uncertainty about whether these temperature-driven trends will continue, or whether
Biotic responses buffer warming‐induced soil organic carbon loss in Arctic tundra
Climate warming can result in both abiotic (e.g., permafrost thaw) and biotic (e.g., microbial functional genes) changes in Arctic tundra. Recent research has incorporated dynamic permafrost thaw in Earth
Evaluation of land surface phenology from VIIRS data using time series of PhenoCam imagery
Land surface phenology (LSP) has been widely retrieved from time series of various satellite instruments in order to monitor climate change and ecosystem dynamics. However, any evaluation of the
Spatial and temporal variation in moss-associated dinitrogen fixation in coniferous- and deciduous-dominated Alaskan boreal forests
Dominant canopy tree species have strong effects on the composition and function of understory species, particularly bryophytes. In boreal forests, bryophytes and their associated microbes are a primary source
Response of soil respiration and its components to experimental warming and water addition in a temperate Sitka spruce forest ecosystem
Future climate change is expected to alter the terrestrial carbon cycle through its impact on soil respiration. In this study, we determined the responses of soil respiration and its
Long-term straw decomposition in agro-ecosystems described by a unified three-exponentiation equation with thermal time
Understanding drivers of straw decomposition is essential for adopting appropriate management practice to improve soil fertility and promote carbon (C) sequestration in agricultural systems. However, predicting straw decomposition and
Contribution of environmental forcings to US runoff changes for the period 1950–2010
Runoff in the United States is changing, and this study finds that the measured change is dependent on the geographic region and varies seasonally. Specifically, observed annual total runoff
An integrated phenology modelling framework in R
Abstract Phenology is a first-order control on productivity and mediates the biophysical environment by altering albedo, surface roughness length and evapotranspiration. Accurate and transparent modelling of vegetation phenology is
Sources of uncertainty in modeled land carbon storage within and across three MIPs: Diagnosis with three new techniques
Terrestrial carbon cycle models have incorporated increasingly more processes as a means to achieve more-realistic representations of ecosystem carbon cycling. Despite this, there are large across-model variations in the
Differential responses of soil CO2 and N2O fluxes to experimental warming
Land-use conversions and elevated temperature can impact on carbon dioxide (CO2) and nitrous oxide (N2O) emissions, both of which are important greenhouse gasses (GHGs). Afforestation activity has increased significantly
Responses of litter decomposition and nutrient release to N addition: A meta-analysis of terrestrial ecosystems
As atmospheric nitrogen (N) concentrations increase, it can wreak havoc on the entire planet, as well as the fragile ecosystems, once it exceeds the demand of ecosystems. Chronically elevated
Plant acclimation to long-term high nitrogen deposition in an N-rich tropical forest
Elevated atmospheric N deposition threatens ecosystem health through eutrophication in terrestrial ecosystems, but little is known about consequences of N deposition in N-rich tropical ecosystems. We added several levels
Water response of ecosystem respiration regulates future projection of net ecosystem productivity in a semiarid grassland
Recent evidences show that terrestrial biogeochemical models have large uncertainty in estimating climate-change effect on grassland net ecosystem productivity (NEP), which is defined as the difference between gross ecosystem
Global patterns of extreme drought-induced loss in land primary production: Identifying ecological extremes from rain-use efficiency
Quantifying the ecological patterns of loss of ecosystem function in extreme drought is important to understand the carbon exchange between the land and atmosphere. Rain-use efficiency [RUE; gross primary
Cross‐scale controls on carbon emissions from boreal forest megafires
Climate warming and drying is associated with increased wildfire disturbance and the emergence of megafires in North American boreal forests. Changes to the fire regime are expected to strongly
Water source niche overlap increases with site moisture availability in woody perennials
Classical niche partitioning theory posits increased competition for and partitioning of the most limiting resource among coexisting species. Coexisting plant species may vary in rooting depth, reflecting niche partitioning
Asynchrony among local communities stabilises ecosystem function of metacommunities
Temporal stability of ecosystem functioning increases the predictability and reliability of ecosystem services, and understanding the drivers of stability across spatial scales is important for land management and policy
Response of water use efficiency to global environmental change based on output from terrestrial biosphere models
Water use efficiency (WUE), defined as the ratio of gross primary productivity and evapotranspiration at the ecosystem scale, is a critical variable linking the carbon and water cycles. Incorporating
Greater temperature sensitivity of plant phenology at colder sites: implications for convergence across northern latitudes
Warmer temperatures are accelerating the phenology of organisms around the world. Temperature sensitivity of phenology might be greater in colder, higher latitude sites than in warmer regions, in part
A Dynamic Landsat Derived Normalized Difference Vegetation Index (NDVI) product for the conterminous United States
Satellite derived vegetation indices (VIs) are broadly used in ecological research, ecosystem modeling, and land surface monitoring. The Normalized Difference Vegetation Index (NDVI), perhaps the most utilized VI, has
Estimation of plant area index and phenological transition dates from digital repeat photography and radiometric approaches in a hardwood forest in the Northeastern United States
Long-term, continuous digital camera imagery and tower-based radiometric monitoring were conducted at a representative hardwood forest site in the Northeastern United States, part of the AmeriFlux network. In this
Model-based analysis of the impact of diffuse radiation on CO2 exchange in a temperate deciduous forest
Clouds and aerosols increase the fraction of global solar irradiance that is diffuse light. This phenomenon is known to increase the photosynthetic light use efficiency (LUE) of closed-canopy vegetation
Observing Spring and Fall Phenology in a Deciduous Forest with Aerial Drone Imagery
Plant phenology is a sensitive indicator of the effects of global change on terrestrial ecosystems and controls the timing of key ecosystem functions including photosynthesis and transpiration. Aerial drone
On the relationship between continuous measures of canopy greenness derived using near-surface remote sensing and satellite-derived vegetation products
Over the last two decades, satellite-derived estimates of biophysical variables have been increasingly used in operational services, requiring quantification of their accuracy and uncertainty. Evaluating satellite-derived vegetation products is
Microbial functional diversity covaries with permafrost thaw‐induced environmental heterogeneity in tundra soil
Permafrost soil in high latitude tundra is one of the largest terrestrial carbon (C) stocks and is highly sensitive to climate warming. Understanding microbial responses to warming‐induced environmental changes
Enhanced decomposition of stable soil organic carbon and microbial catabolic potentials by long‐term field warming
Quantifying soil organic carbon (SOC) decomposition under warming is critical to predict carbon–climate feedbacks. According to the substrate regulating principle, SOC decomposition would decrease as labile SOC declines under
Data‐constrained projections of methane fluxes in a northern Minnesota peatland in response to elevated CO2 and warming
Large uncertainties exist in predicting responses of wetland methane (CH4) fluxes to future climate change. However, sources of the uncertainty have not been clearly identified despite the fact that
Effects of carbon turnover time on terrestrial ecosystem carbon storage
Carbon (C) turnover time is a key factor in determining C storage capacity in various plant and soil pools as well as terrestrial C sink in a changing climate.
Transient traceability analysis of land carbon storage dynamics: Procedures and its application to two forest ecosystems
Uptake of anthropogenically emitted carbon (C) dioxide by terrestrial ecosystem is critical for determining future climate. However, Earth system models project large uncertainties in future C storage. To help
Food‐animal production and the spread of antibiotic resistance: The role of ecology
Antibiotic‐resistant pathogens increasingly threaten human health. Widespread application of antibiotics to animal populations raised for food, including chickens, cattle, and pigs, selects for resistance and contributes to the evolution
Colonizing opportunistic pathogens (COPs): The beasts in all of us
Colonizing opportunistic pathogens (COPs) are microbes that asymptomatically colonize the human body and, when the conditions are right, can cause infections. Their ability to persist indefinitely and to be
Response to the Letter to the Editor regarding our viewpoint “Sequestering soil organic carbon: A nitrogen dilemma”
We disagree with the statement by Soussana et al. that the 4p1000 goal is already sufficiently spatially diversified because it is related to the local soil organic C (SOC)
Higher yields and lower methane emissions with new rice cultivars
Breeding high‐yielding rice cultivars through increasing biomass is a key strategy to meet rising global food demands. Yet, increasing rice growth can stimulate methane (CH4) emissions, exacerbating global climate
Soil fungal abundance and plant functional traits drive fertile island formation in global drylands
1. Dryland vegetation is characterized by discrete plant patches that accumulate and capture soil resources under their canopies. These “fertile islands” are major drivers of dryland ecosystem structure and
Assessing the relationship between microwave vegetation optical depth and gross primary production
At the global scale, the uptake of atmospheric carbon dioxide by terrestrial ecosystems through photosynthesis is commonly estimated through vegetation indices or biophysical properties derived from optical remote sensing
Beyond clay: Towards an improved set of variables for predicting soil organic matter content
Improved quantification of the factors controlling soil organic matter (SOM) stabilization at continental to global scales is needed to inform projections of the largest actively cycling terrestrial carbon pool
Intercomparison of phenological transition dates derived from the PhenoCam Dataset V1.0 and MODIS satellite remote sensing
Phenology is a valuable diagnostic of ecosystem health, and has applications to environmental monitoring and management. Here, we conduct an intercomparison analysis using phenological transition dates derived from near-surface
Fine-scale perspectives on landscape phenology from unmanned aerial vehicle (UAV) photography
Forest phenology is a multi-scale phenomenon, arising from processes in leaves and trees, with effects on the ecology of plant communities and landscapes. Because phenology controls carbon and water
A steady-state approximation approach to simulate seasonal leaf dynamics of deciduous broadleaf forests via climate variables
As leaves are the basic elements of plants that conduct photosynthesis and transpiration, vegetation leaf dynamics controls canopy physical and biogeochemical processes and hence largely influences the interactive exchanges
Effects of forest tent caterpillar defoliation on carbon and water fluxes in a boreal aspen stand
Insect outbreaks can significantly influence carbon (C) and water balances of forests. Forest tent caterpillars (FTC) (Malacosoma disstria Hübner) are one of the most prominent insects found in aspen
Rooting depth varies differentially in trees and grasses as a function of mean annual rainfall in an African savanna
A significant fraction of the terrestrial biosphere comprises biomes containing tree–grass mixtures. Forecasting vegetation dynamics in these environments requires a thorough understanding of how trees and grasses use and
Decomposition of Senesced leaf litter is faster in tall compared to low birch shrub tundra
Many Low Arctic tundra regions are currently undergoing a vegetation shift towards increasing growth and groundcover of tall deciduous shrubs due to recent climate warming. Vegetation change directly affects
Soil organic layer combustion in boreal black spruce and jack pine stands of the Northwest Territories, Canada
Increased fire frequency, extent and severity are expected to strongly affect the structure and function of boreal forest ecosystems. In this study, we examined 213 plots in boreal forests
Impacts of increased soil burn severity on larch forest regeneration on permafrost soils of far northeastern Siberia
Fire severity is increasing across the boreal forest biome as climate warms, and initial post-fire changes in tree demographic processes could be important determinants of long-term forest structure and
Increased vegetation growth and carbon stock in China karst via ecological engineering
Afforestation and reforestation projects in the karst regions of southwest China aim to combat desertification and improve the ecological environment. However, it remains unclear at what scale conservation efforts
Functional traits along a transect
Functional traits, which usually develop over evolutionary time‐scales to maximize plant survivorship and functional performances in changing environment, are important indices to explore how ecosystems respond and adapt to
Temperature sensitivity of soil organic carbon decomposition increased with mean carbon residence time: Field incubation and data assimilation
Temperature sensitivity of soil organic carbon (SOC) decomposition is one of the major uncertainties in predicting climate‐carbon (C) cycle feedback. Results from previous studies are highly contradictory with old
Effects of climate on soil phosphorus cycle and availability in natural terrestrial ecosystems
Climate is predicted to change over the 21st century. However, little is known about how climate change can affect soil phosphorus (P) cycle and availability in global terrestrial ecosystems,
Matrix approach to land carbon cycle modeling: A case study with the Community Land Model
The terrestrial carbon (C) cycle has been commonly represented by a series of C balance equations to track C influxes into and effluxes out of individual pools in earth
Forecasting responses of a northern peatland carbon cycle to elevated CO2 and a gradient of experimental warming
The ability to forecast ecological carbon cycling is imperative to land management in a world where past carbon fluxes are no longer a clear guide in the Anthropocene. However,
Conifer radial growth response to recent seasonal warming and drought from the southwestern USA
Future droughts are expected to become more severe and frequent under future climate change scenarios, likely causing widespread tree mortality in the western USA. Coping with an uncertain future
Ecosystem responses to elevated CO2 governed by plant–soil interactions and the cost of nitrogen acquisition
Land ecosystems sequester on average about a quarter of anthropogenic CO2 emissions. It has been proposed that nitrogen (N) availability will exert an increasingly limiting effect on plants’ ability to
Pulsed flows, tributary inputs and food‐web structure in a highly regulated river
1.Dams disrupt the river continuum, altering hydrology, biodiversity and energy flow. Although research indicates that tributary inputs have the potential to dilute these effects, knowledge at the food‐web level
Effects of plant species on stream bacterial communities via leachate from leaf litter
Leaf litter provides an important resource to forested stream ecosystems. During leaf fall a significant amount of dissolved organic carbon (DOC) enters streams as leaf leachate. We compared the
Predicting soil carbon loss with warming
Crowther et al. Reported that the best predictor of surface soil carbon (top 10 cm) losses in response to warming is the size of the surface carbon stock in the soil
Taxonomic patterns in the nitrogen assimilation of soil prokaryotes
Nitrogen (N) is frequently a limiting nutrient in soil; its availability can govern ecosystem functions such as primary production and decomposition. Assimilation of N by microorganisms impacts the availability
Microbial rRNA synthesis and growth compared through quantitative stable isotope probing with H218O
Growing bacteria have a high concentration of ribosomes to ensure sufficient protein synthesis, which is necessary for genome replication and cellular division. To elucidate whether metabolic activity of soil
Ecosystem responses to restored flow in a travertine river
Disruptions of natural flow impair rivers and streams worldwide. Those conducting restoration efforts have rarely explored how and when stream ecosystems can recover after reinstating natural flows. We quantified
Linking tree genetics and stream consumers: Isotopic tracers elucidate controls on carbon and nitrogen assimilation
Leaf litter provides an important nutrient subsidy to headwater streams, but little is known about how tree genetics influences energy pathways from litter to higher trophic levels. Despite the
Soil mineral assemblage and substrate quality effects on microbial priming
Native soil organic carbon (SOC) decomposition rates may be altered through increased carbon (C) input, a phenomenon known as SOC priming (Blagodatskaya et al., 2011). Quantifying priming is important because it
Dependence of the evolution of carbon dynamics in the northern permafrost region on the trajectory of climate change
We conducted a model-based assessment of changes in permafrost area and carbon storage for simulations driven by RCP4.5 and RCP8.5 projections between 2010 and 2299 for the northern permafrost
Tracking vegetation phenology across diverse North American biomes using PhenoCam imagery
Vegetation phenology controls the seasonality of many ecosystem processes, as well as numerous biosphere-atmosphere feedbacks. Phenology is also highly sensitive to climate change and variability. Here we present a
Estimating taxon-specific population dynamics in diverse microbial communities
Understanding how population-level dynamics contribute to ecosystem-level processes is a primary focus of ecological research and has led to important breakthroughs in the ecology of macroscopic organisms. However, the
Fuel-reduction management alters plant composition, carbon and nitrogen pools, and soil thaw in Alaskan boreal forest
Increasing wildfire activity in Alaska’s boreal forests has led to greater fuel reduction management. Management has been implemented to reduce wildfire spread, but the ecological impacts of these practices
Multi-decadal time series of remotely sensed vegetation improves prediction of soil carbon in a subtropical grassland
Soil carbon sequestration in agroecosystems could play a key role in climate change mitigation but will require accurate predictions of soil organic carbon (SOC) stocks over spatial scales relevant
Losing legacies, ecological release, and transient responses: Key challenges for the future of northern ecosystem science
Northern ecosystem processes play out across scales that are rare elsewhere on contemporary earth: large ranging predator–prey systems are still operational, invasive species are rare, and large-scale natural disturbances
Centennial-scale reductions in nitrogen availability in temperate forests of the United States
Forests cover 30% of the terrestrial Earth surface and are a major component of the global carbon (C) cycle. Humans have doubled the amount of global reactive nitrogen (N),
Patterns of bryophyte succession in a 160 year chronosequence in deciduous and coniferous forests of boreal Alaska
Bryophytes are dominant components of boreal forest understories and play a large role in regulating soil microclimate and nutrient cycling. Therefore, shifts in bryophyte communities have the potential to
Ecosystem vs. community recovery 25 years after grass invasions and fire in a subtropical woodland
Despite a large body of research documenting invasive plant impacts, few studies have followed individual invaded sites over decades to observe how they change, and none have contrasted how
Gap regeneration within mature deciduous forests of Interior Alaska: Implications for future forest change
Increased fire severity in boreal forests of Interior Alaska is shifting forest canopy composition from black spruce (Picea mariana) to deciduous species, including trembling aspen (Populus tremuloides) and Alaska
Climate controls prokaryotic community composition in desert soils of the southwestern United States
Aridisols are the dominant soil type in drylands, which occupy one-third of Earth’s terrestrial surface. We examined controls on biogeographical patterns of Aridisol prokaryotic (bacterial and archaeal) communities at
Global distribution of groundwater-vegetation spatial covariation
Groundwater is an integral component of the water cycle, and it also influences the carbon cycle by supplying moisture to ecosystems. However, the extent and determinants of groundwater-vegetation interactions
Reduced North American terrestrial primary productivity linked to anomalous Arctic warming
Warming temperatures in the Northern Hemisphere have enhanced terrestrial productivity. Despite the warming trend, North America has experienced more frequent and more intense cold weather events during winters and springs.
Compensatory water effects link yearly global land CO2 sink changes to temperature
Large interannual variations in the measured growth rate of atmospheric carbon dioxide (CO2) originate primarily from fluctuations in carbon uptake by land ecosystems. It remains uncertain, however, to what
Global land carbon sink response to temperature and precipitation varies with ENSO phase
Climate variability associated with the El Niño-Southern Oscillation (ENSO) and its consequent impacts on land carbon sink interannual variability have been used as a basis for investigating carbon cycle
Assessing oxygen depletion in the Northeastern Pacific Ocean during the last deglaciation using I/Ca ratios from multiple benthic foraminiferal species
Paleo-redox proxies are crucial for reconstructing past bottom water oxygen concentration changes brought about by ocean circulation and marine productivity shifts in response to climate forcing. Carbonate I/Ca ratios
Impacts of fire on non-native plant recruitment in black spruce forests of interior Alaska
Climate change is expected to increase the extent and severity of wildfires throughout the boreal forest. Historically, black spruce (Picea mariana (Mill.) B.S.P.) forests in interior Alaska have been relatively
Deep Yedoma permafrost: A synthesis of depositional characteristics and carbon vulnerability
Permafrost is a distinct feature of the terrestrial Arctic and is vulnerable to climate warming. Permafrost degrades in different ways, including deepening of a seasonally unfrozen surface and localized
Global patterns of drought recovery
Drought, a recurring phenomenon with major impacts on both human and natural systems, is the most widespread climatic extreme that negatively affects the land carbon sink. Although twentieth-century trends
Characterization of growing bacterial populations in McMurdo Dry Valley soils through stable isotope probing with 18O-water
Soil microbial communities of the McMurdo Dry Valleys, Antarctica (MDV) contain representatives from at least fourteen bacterial phyla. However, given low rates of microbial activity, it is unclear whether
Tundra is a consistent source of CO2 at a site with progressive permafrost thaw during six years of chamber and eddy covariance measurements
Current and future warming of high latitude ecosystems will play an important role in climate change through feedbacks to the global carbon cycle. This study compares six years of
Bacterial carbon use plasticity, phylogenetic diversity and the priming of soil organic matter
Microorganisms perform most decomposition on Earth, mediating carbon (C) loss from ecosystems, and thereby influencing climate. Yet, how variation in the identity and composition of microbial communities influences ecosystem
Faster turnover of new soil carbon inputs under increased atmospheric CO2
Rising levels of atmospheric CO2 frequently stimulate plant inputs to soil, but the consequences of these changes for soil carbon (C) dynamics are poorly understood. Plant-derived inputs can accumulate
Importance of lateral flux and its percolation depth on organic carbon export in Arctic tundra soil: Implications from a soil leaching experiment
Temperature rise in the Arctic is causing deepening of active layers and resulting in the mobilization of deep permafrost dissolved organic matter (DOM). However, the mechanisms of DOM mobilization
A general biodiversity-function relationship is mediated by trophic level
Species diversity affects the functioning of ecosystems, including the efficiency by which communities capture limited resources, produce biomass, recycle and retain biologically essential nutrients. These ecological functions ultimately support
Labile carbon inputs determines the direction and magnitude of the soil priming effect
Labile carbon (C) input to soil can accelerate or slow the decomposition of soil organic matter, a phenomenon called priming. However, priming is difficult to predict, making its relationship
Biochar boosts tropical but not temperate crop yields
Applying biochar to soil is thought to have multiple benefits, from helping mitigate climate change [1, 2], to managing waste [3] to conserving soil [4]. Biochar is also widely
Increased plant uptake of native soil nitrogen following fertilizer addition – not a priming effect?
Fertilizer inputs affect plant uptake of native soil nitrogen (N), yet the underlying mechanisms remain elusive. To increase mechanistic insight into this phenomenon, we evaluated the effect of fertilizer
The influence of monsoon climate on latewood growth of southwestern ponderosa pine
The North American Monsoon delivers warm season precipitation to much of the southwestern United States, yet the importance of this water source for forested ecosystems in the region is
The economic value of grassland species for carbon storage
Carbon storage by ecosystems is valuable for climate protection. Biodiversity conservation may help increase carbon storage, but the value of this influence has been difficult to assess. We use
Plant growth promoting rhizobacteria are more effective under drought: a meta-analysis
Plant growth promoting rhizobacteria (PGPR) have been shown to reduce abiotic stress on plants, but these effects have not been quantitatively synthesized. We evaluated the degree to which plant
Non-linear CO2 flux response to seven years of experimentally induced permafrost thaw
Rapid Arctic warming is expected to increase global greenhouse gas concentrations as permafrost thaw exposes immense stores of frozen carbon (C) to microbial decomposition. Permafrost thaw also stimulates plant
Predicting Ecosystem Resilience to Fire from Tree Ring Analysis in Black Spruce Forests
Climate change has increased the occurrence, severity, and impact of disturbances on forested ecosystems worldwide, resulting in a need to identify factors that contribute to an ecosystem’s resilience or
Flow Management for Hydropower Extirpates Aquatic Insects, Undermining River Food Webs
Dams impound the majority of rivers and provide important societal benefits, especially daily water releases that enable on-peak hydroelectricity generation. Such “hydropeaking” is common worldwide, but its downstream impacts
Phenology of the adult angel lichen moth (Cisthene angelus) in Grand Canyon, USA
We investigated the phenology of adult angel lichen moths (Cisthene angelus) along a 364-km long segment of the Colorado River in Grand Canyon, Arizona, USA, using a unique data
Quantifying and reducing uncertainties in estimated soil CO2 fluxes with hierarchical data-model integration
Nonsteady state chambers are often employed to measure soil CO2 fluxes. CO2 concentrations (C) in the headspace are sampled at different times (t), and fluxes (f) are calculated from
The soil and plant biogeochemistry sampling design for The National Ecological Observatory Network
Human impacts on biogeochemical cycles are evident around the world, from changes to forest structure and function due to atmospheric deposition, to eutrophication of surface waters from agricultural effluent,
Shallow snowpack inhibits soil respiration in sagebrush steppe through multiple biotic and abiotic mechanisms
In sagebrush steppe, snowpack may govern soil respiration through its effect on multiple abiotic and biotic factors. Across the Intermountain West of the United States, snowpack has been declining
Legacy effects of drought in the southwestern United States: A multi-species synthesis
Understanding impacts of drought on tree growth and forest health is of major concern given projected climate change. Droughts may become more common in the Southwest due to extreme
Plant and ecosystem memory
Of course plants do not have brains and, thus, cannot actually remember what happened to them in the past. Although plants cannot remember, however, we use “memory” as a
A framework for partitioning plant rooting profiles from neighbours using multiple data types
Aim Vertical root distributions (‘profiles’) influence plant water use and productivity, and the differentiation of root profiles between neighbouring species can indicate the degree of plant interactions and niche
A Bayesian model for xylem vessel length accommodates subsampling and reveals skewed distributions in species that dominate seasonal habitats.
Vessel length is an important but understudied dimension of variation in angiosperm vascular anatomy. Among other traits, vessel length mediates an important tradeoff between hydraulic efficiency and safety that
Temporal variability in hydrology modifies the influence of geomorphology on wetland distribution along a desert stream
Both geomorphic setting and dynamic environmental variables influence riverine wetland vegetation distributions. Most studies of species distributions in riverine systems emphasize either hydrological variability or geomorphic controls, but rarely
Antecedent moisture and temperature conditions modulate the response of ecosystem respiration to elevated CO2 and warming
Terrestrial plant and soil respiration, or ecosystem respiration (Reco), represents a major CO2 flux in the global carbon cycle. However, there is disagreement in how Reco will respond to
Isotope partitioning of soil respiration: A Bayesian solution to accommodate multiple sources of variability
Isotopic methods offer great potential for partitioning trace gas fluxes such as soil respiration into their different source contributions. Traditional partitioning methods face challenges due to variability introduced by
Seasonal stomatal behavior of a common desert shrub and the influence of plant neighbors
Stomata simultaneously regulate plant carbon gain and water loss, and patterns of stomatal conductance (gs) provide insight into water use strategies. In arid systems, gs varies seasonally based on
Quantifying ecological memory in plant and ecosystem processes
The role of time in ecology has a long history of investigation, but ecologists have largely restricted their attention to the influence of concurrent abiotic conditions on rates and
Combining and comparing multiple serial dilution assays of particles in solution: application to brucellosis in elk of the Greater Yellowstone Ecosystem
The concentration detection threshold (CDT) is the concentration of particles in solution beyond which a (serial dilution) assay detects particle presence. By our account, CDTs typically are not estimated
Slowed Biogeochemical Cycling in Sub-arctic Birch Forest Linked to Reduced Mycorrhizal Growth and Community Change after a Defoliation Event
Sub-arctic birch forests (Betula pubescens Ehrh. ssp. czerepanovii) periodically suffer large-scale defoliation events caused by the caterpillars of the geometrid moths Epirrita autumnata and Operophtera brumata. Despite their obvious
Vertical stratification of the foliar fungal community in the world’s tallest trees
PREMISE OF THE STUDY: The aboveground tissues of plants host numerous, ecologically important fungi, yet patterns in the spatial distribution of these fungi remain little known. Forest canopies in
Terrestrial Carbon Cycle
The Arctic continues to warm at a rate that is currently twice as fast as the global average (see essay on Surface Air Temperature). Warming is causing normally frozen
An empirical spatiotemporal description of the global surface-atmosphere carbon fluxes: opportunities and data limitations
Understanding the global carbon (C) cycle is of crucial importance to map current and future climate dynamics relative to global environmental change. A full characterization of C cycling requires
Predicting carbon dioxide and energy fluxes across global FLUXNET sites with regression algorithms
Spatio-temporal fields of land–atmosphere fluxes derived from data-driven models can complement simulations by process-based land surface models. While a number of strategies for empirical models with eddy-covariance flux data
The terrestrial biosphere as a net source of greenhouse gases to the atmosphere
The terrestrial biosphere can release or absorb the greenhouse gases, carbon dioxide (CO2), methane (CH4) and nitrous oxide (N2O), and therefore has an important role in regulating atmospheric composition
Uncertainty analysis of terrestrial net primary productivity and net biome productivity in China during 1901–2005
Despite the importance of net primary productivity (NPP) and net biome productivity (NBP), estimates of NPP and NBP for China are highly uncertain. To investigate the main sources of
Increased light-use efficiency in northern terrestrial ecosystems indicated by CO2 and greening observations
Observations show an increasing amplitude in the seasonal cycle of CO2 (ASC) north of 45°N of 56 ± 9.8% over the last 50 years and an increase in vegetation greenness
Contrasting changes in gross primary productivity of different regions of North America as affected by warming in recent decades
Ecosystem responses to the increasing warming in recent decades across North America (NA) are spatially heterogeneous and partly uncertain. Here we examined the spatial and temporal variability of warming
DECADAL TRENDS IN THE SEASONAL-CYCLE AMPLITUDE OF TERRESTRIAL CO2 EXCHANGE RESULTING FROM THE ENSEMBLE OF TERRESTRIAL BIOSPHERE MODELS
The seasonal-cycle amplitude (SCA) of the atmosphere–ecosystem carbon dioxide (CO2) exchange rate is a useful metric of the responsiveness of the terrestrial biosphere to environmental variations. It is unclear,
Technical note: 3-hourly temporal downscaling of monthly global terrestrial biosphere model net ecosystem exchange
The land surface provides a boundary condition to atmospheric forward and flux inversion models. These models require prior estimates of CO2 fluxes at relatively high temporal resolutions (e.g., 3-hourly)
DataONE: A Data Federation with Provenance Support
DataONE is a federated data network focusing on earth and environmental science data. We present the provenance and search features of DataONE by means of an example involving three
Identification of growing bacteria during litter decomposition in freshwater through H2 18O quantitative stable isotope probing
Identification of microorganisms that facilitate the cycling of nutrients in freshwater is paramount to understanding how these ecosystems function. Here, we identify growing aquatic bacteria using quantitative stable isotope
Climate-driven changes in forest succession and the influence of management on forest carbon dynamics in the Puget Lowlands of Washington State, USA
Projecting the response of forests to changing climate requires understanding how biotic and abiotic controls on tree growth will change over time. As temperature and interannual precipitation variability increase,
Circumpolar distribution and carbon storage of thermokarst landscapes
Thermokarst is the process whereby the thawing of ice-rich permafrost ground causes land subsidence, resulting in development of distinctive landforms. Accelerated thermokarst due to climate change will damage infrastructure,
Hydraulic constraints modify optimal photosynthetic profiles in giant sequoia trees
Optimality theory states that whole-tree carbon gain is maximized when leaf N and photosynthetic capacity profiles are distributed along vertical light gradients such that the marginal gain of nitrogen
Variability in the sensitivity among model simulations of permafrost and carbon dynamics in the permafrost region between 1960 and 2009
A significant portion of the large amount of carbon (C) currently stored in soils of the permafrost region in the Northern Hemisphere has the potential to be emitted as
Microbial Community Responses to Increased Water and Organic Matter in the Arid Soils of the McMurdo Dry Valleys, Antarctica
The soils of the McMurdo Dry Valleys, Antarctica are an extreme polar desert, inhabited exclusively by microscopic taxa. This region is on the threshold of anticipated climate change, with
Long-term drainage reduces CO2 uptake and increases CO2 emission on a Siberian floodplain due to shifts in vegetation community and soil thermal characteristics
With increasing air temperatures and changing precipitation patterns forecast for the Arctic over the coming decades, the thawing of ice-rich permafrost is expected to increasingly alter hydrological conditions by
Effects of permafrost thaw on nitrogen availability and plant-soil interactions in a boreal Alaskan lowland
Increasing rates of permafrost thaw in boreal peatlands are converting conifer forests to waterlogged open wetlands. Permafrost thaw increases soil nitrogen (N) availability, but it is unclear whether such
A Framework to Assess Biogeochemical Response to Ecosystem Disturbance Using Nutrient Partitioning Ratios
Disturbances affect almost all terrestrial ecosystems, but it has been difficult to identify general principles regarding these influences. To improve our understanding of the long-term consequences of disturbance on
Going where no grains have gone before: From early to mid-succession
Annual-based arable agroecosystems experience among the greatest frequency, extent and magnitude of disturbance regimes of all terrestrial ecosystems. In order to control non-crop vegetation, farmers implement tillage practices and/or
A Canopy Shift in Interior Alaskan Boreal Forests: Consequences for Above- and Belowground Carbon and Nitrogen Pools during Post-fire Succession
Global change models predict that high-latitude boreal forests will become increasingly susceptible to fire activity as climate warms, possibly causing a positive feedback to warming through fire-driven emissions of
Mycorrhizal association as a primary control of the CO2 fertilization effect
Plants buffer increasing atmospheric carbon dioxide (CO2) concentrations through enhanced growth, but the question whether nitrogen availability constrains the magnitude of this ecosystem service remains unresolved. Synthesizing experiments from
Potential carbon emissions dominated by carbon dioxide from thawed permafrost soils
Increasing temperatures in northern high latitudes are causing permafrost to thaw, making large amounts of previously frozen organic matter vulnerable to microbial decomposition. Permafrost thaw also creates a fragmented
Plant genotype influences aquatic-terrestrial ecosystem linkages through timing and composition of insect emergence
Terrestrial leaf litter provides aquatic insects with an energy source and habitat structure, and species differences in litter can influence aquatic insect emergence. Emerging insects also provide energy to riparian predators.
Predicting the Responses of Soil Nitrite-Oxidizers to Multi-Factorial Global Change: A Trait-Based Approach
Soil microbial diversity is huge and a few grams of soil contain more bacterial taxa than there are bird species on Earth. This high diversity often makes predicting the
Fire‑severity effects on plant–fungal interactions after a novel tundra wildfire disturbance: implications for arctic shrub and tree migration
Background: Vegetation change in high latitude tundra ecosystems is expected to accelerate due to increased wild-fire activity. High-severity fires increase the availability of mineral soil seedbeds, which facilitates recruitment, yet
Physical and ecological changes associated with warming permafrost and thermokarst in interior Alaska
Observations and measurements were made of physical and ecological changes that have occurred since 1985 at a tundra site near Healy, Alaska. Air temperatures decreased (1985 through 1999) while
Global patterns of foliar nitrogen isotopes and their relationships with climate, mycorrhizal fungi, foliar nutrient concentrations, and nitrogen availability
Ratios of nitrogen (N) isotopes in leaves could elucidate underlying patterns of N cycling across ecological gradients. To better understand global-scale patterns of N cycling, we compiled data on
Response of CO2 exchange in a tussock tundra ecosystem to permafrost thaw and thermokarst development
Climate change in high latitudes can lead to permafrost thaw, which in ice-rich soils can result in ground subsidence, or thermokarst. In interior Alaska, we examined seasonal and annual
Mobility of icy sand packs, with application to Martian permafrost
The physical state of water on Mars has fundamental ramifications for both climatology and astrobiology. The widespread presence of “softened” Martian landforms (such as impact craters) can be attributed
Soil CO2 production in upland tundra where permafrost is thawing
Permafrost soils store nearly half of global soil carbon (C), and therefore permafrost thawing could lead to large amounts of greenhouse gas emissions via decomposition of soil organic matter.
Potential remobilization of belowground permafrost carbon under future global warming
Research on permafrost carbon has dramatically increased in the past few years, A new estimate of 1672 Pg C of belowground organic carbon in the northern circumpolar permafrost region
Resilience and vulnerability of permafrost to climate change
The resilience and vulnerability of permafrost to climate change depends on complex interactions among topography, water, soil, vegetation, and snow, which allow permafrost to persist at mean annual air
The effect of nutrient deposition on bacterial communities in Arctic tundra soil
The microbial communities of high-latitude ecosystems are expected to experience rapid changes over the next century due to climate warming and increased deposition of reactive nitrogen, changes that will
Quantifying fire severity, carbon, and nitrogen emissions in Alaska’s boreal forest
The boreal region stores a large proportion of the world’s terrestrial carbon (C) and is subject to high-intensity, stand-replacing wildfires that release C and nitrogen (N) stored in biomass
The carbon budget of the northern cryosphere region
The northern cryosphere is undergoing substantial warming of permafrost and loss of sea ice. Release of stored carbon to the atmosphere in response to this change has the potential
Effects of experimental warming of air, soil and permafrost on carbon balance in Alaskan tundra
The carbon (C) storage capacity of northern latitude ecosystems may diminish as warming air temperatures increase permafrost thaw and stimulate decomposition of previously frozen soil organic C. However, warming
A spatially explicit analysis to extrapolate carbon fluxes in upland tundra where permafrost is thawing
One of the most important changes in high-latitude ecosystems in response to climatic warming may be the thawing of permafrost soil. In upland tundra, the thawing of ice-rich permafrost
Relationships among precipitation regime, nutrient availability, and carbon turnover in tropical rain forests
The effect of high precipitation regime in tropical forests is poorly known despite indications of its potentially negative effects on nutrient availability and carbon (C) cycling. Our goal was
Fossil organic matter characteristics in permafrost deposits of the northeast Siberian Arctic
Permafrost deposits constitute a large organic carbon pool highly vulnerable to degradation and potential carbon release due to global warming. Permafrost sections along coastal and river bank exposures in
Carbon loss from an unprecedented Arctic tundra wildfire
Arctic tundra soils store large amounts of carbon (C) in organic soil layers hundreds to thousands of years old that insulate, and in some cases maintain, permafrost soilsl,2. Fire
Effects of elevated nitrogen and temperature on carbon and nitrogen dynamics in Alaskan arctic and boreal soils
Plant productivity in upland tundra and boreal forest is demonstrably limited by nitrogen (N) and indirect evidence from field studies suggests that decomposition by soil microbes may be similarly
Ecology: Nitrogen from the deep
Ecosystems acquire nitrogen from the atmosphere, but this source can’t account for the large nitrogen capital of some systems. The finding that bedrock can also act as a nitrogen
Evidence and implications of recent and projected climate change in Alaska’s forest ecosystems
The structure and function of Alaska’s forests have changed significantly in response to a changing climate, including alterations in species composition and climate feedbacks (e.g., carbon, radiation budgets) that
Soil carbon distribution in Alaska in relation to soil-forming factors
The direction and magnitude of soil organic carbon (SOC) changes in response to climate change remain unclear and depend on the spatial distribution of SOC across landscapes. Uncertainties regarding
Climate change: High risk of permafrost thaw
In this article, author comments on the effect of climate change in the arctic region. It mentions that the temperatures of arctic region are rising fast, and permafrost is
Getting to the root of the matter: Landscape implications of plant-fungal interactions for tree migration in Alaska
Context Forecasting the expansion of forest into Alaska tundra is critical to predicting regional ecosystem services, including climate feedbacks such as carbon storage. Controls over seedling establishment govern forest
Vulnerability of high-latitude soil organic carbon in North America to disturbance
This synthesis addresses the vulnerability of the North American high-latitude soil organic carbon (SOC) pool to climate change. Disturbances caused by climate warming in arctic, subarctic, and boreal environments
Seven-year trends of CO2 exchange in a tundra ecosystem affected by long-term permafrost thaw
Arctic warming has led to permafrost degradation and ground subsidence, created as a result of ground ice melting. Frozen soil organic matter that thaws can increase carbon (C) emissions
Holocene Carbon Stocks and Carbon Accumulation Rates Altered in Soils Undergoing Permafrost Thaw
Permafrost soils are a significant global store of carbon (C) with the potential to become a large C source to the atmosphere. Climate change is causing permafrost to thaw,
Increased plant productivity in Alaskan tundra as a result of experimental warming of soil and permafrost
The response of northern tundra plant communities to warming temperatures is of critical concern because permafrost ecosystems play a key role in global carbon (C) storage, and climate-induced ecological
The rate of permafrost carbon release under aerobic and anaerobic conditions and its potential effects on climate
Recent observations suggest that permafrost thaw may create two completely different soil environments: aerobic in relatively well-drained uplands and anaerobic in poorly drained wetlands. The soil oxygen availability will
Field information links permafrost carbon to physical vulnerabilities of thawing
Deep soil profiles containing permafrost (Gelisols) were characterized for organic carbon (C) and total nitrogen (N) stocks to 3 m depths. Using the Community Climate System Model (CCSM4) we calculate
The Disappearing Cryosphere: Impacts and Ecosystem Responses to Rapid Cryosphere Loss
The cryosphere—the portion of the Earth’s surface where water is in solid form for at least one month of the year—has been shrinking in response to climate warming. The
Incorporating spatial heterogeneity created by permafrost thaw into a landscape carbon estimate
The future carbon balance of high-latitude ecosystems is dependent on the sensitivity of biological processes (photosynthesis and respiration) to the physical changes occurring with permafrost thaw. Predicting C exchange
A watering manipulation in a semiarid grassland induced changes in fungal but not bacterial community composition
Monsoon precipitation in the arid southwestern United States is an important driver of ecosystem productivity, delivering up to 50% of annual precipitation during the summer months. These sporadic rainfall
Causes of variation in soil carbon simulations from CMIP5 Earth system models and comparison with observations
Stocks of soil organic carbon represent a large component of the carbon cycle that may participate in climate change feedbacks, particularly on decadal and centennial timescales. For Earth system
Expert assessment of vulnerability of permafrost carbon to climate change
Approximately 1700 Pg of soil carbon (C) are stored in the northern circumpolar permafrost zone, more than twice as much C than in the atmosphere. The overall amount, rate, and
Separating soil CO2 efflux into C-pool-specific decay rates via inverse analysis of soil incubation data
Soil organic matter (SOM) is heterogeneous in structure and has been considered to consist of various pools with different intrinsic turnover rates. Although those pools have been conceptually expressed
Thawing permafrost increases old soil and autotrophic respiration in tundra: Partitioning ecosystem respiration using δ13C and ∆14C
Ecosystem respiration (Reco) is one of the largest terrestrial carbon (C) fluxes. The effect of climate change on Reco depends on the responses of its autotrophic and heterotrophic components.
Moisture drives surface decomposition in thawing tundra
[1] Permafrost thaw can affect decomposition rates by changing environmental conditions and litter quality. As permafrost thaws, soils warm and thermokarst (ground subsidence) features form, causing some areas to become
Long-term CO2 production following permafrost thaw
Thawing permafrost represents a poorly understood feedback mechanism of climate change in the Arctic, but with a potential impact owing to stored carbon being mobilized1, 2, 3, 4, 5.
Increases in mean annual temperature do not alter soil bacterial community structure in tropical montane wet forests
Soil bacteria play a key role in regulating terrestrial biogeochemical cycling and greenhouse gas fluxes across the soil-atmosphere continuum. Despite their importance to ecosystem functioning, we lack a general
Tradeoffs and Compatibilities Among Ecosystem Services: Biological, Physical and Economic Drivers of Multifunctionality
Balancing the joint production of multiple ecosystem services, also referred to as the ‘multifunctionality’ of an ecosystem or landscape, requires understanding of the ecological processes that produce and economic
Quantification of upland thermokarst features with high resolution remote sensing
Climate-induced changes to permafrost are altering high latitude landscapes in ways that could increase the vulnerability of the vast soil carbon pools of the region. Permafrost thaw is temporally
Tundra ecosystems observed to be CO2 sources due to differential amplification of the carbon cycle
Are tundra ecosystems currently a carbon source or sink? What is the future trajectory of tundra carbon fluxes in response to climate change? These questions are of global importance
The response of root and microbial respiration to the experimental warming of a boreal black spruce forest
We investigated the effects of a 5 °C soil + air experimental heating on root and microbial respiration in a boreal black spruce (Picea mariana (Mill.) B.S.P.) forest in
Effects of thermo-erosional disturbance on surface soil carbon and nitrogen dynamics in upland arctic tundra
Thaw of ice-rich permafrost soils on sloping terrain can trigger erosional disturbance events that displace large volumes of soil and sediment, kill and damage plants, and initiate secondary succession.
Modeling permafrost thaw and ecosystem carbon cycle under annual and seasonal warming at an Arctic tundra site in Alaska
Permafrost thaw and its impacts on ecosystem carbon (C) dynamics are critical for predicting global climate change. It remains unclear whether annual and seasonal warming (winter or summer) affect
Detecting changes in soil carbon in CO2 enrichment experiments
After four growing seasons, elevated CO2 did not significantly alter surface soil C pools in two intact annual grasslands. However, soil C pools in these systems are large compared
Stimulation of grassland nitrogen cycling under carbon dioxide enrichment
Nitrogen (N) limits plant growth in many terrestrial ecosystems, potentially constraining terrestrial ecosystem response to elevated CO2. In this study, elevated CO2 stimulated gross N mineralization and plant N
Plant species mediate changes in soil microbial N in response to elevated CO2
The effect of elevated CO2 on plant-microbial interactions and nitrogen (N) cycling is critical to predicting plant growth responses to elevated CO2, because plant growth is often N-limited. We
The influence of microbial community structure and function on community-level physiological profiles
Patterns of carbon source utilization, or community-level physiological profiles (CLPP), produced from direct incubation of environmental samples in BIOLOG microplates can consistently discriminate spatial and temporal gradients within microbial
Atmospheric nitrogen deposition
David A. Wedin and David Tilman (Reports, 6 Dec.,p 1720) show that increased nitrogen inputs to terrestrial ecosystems might cause smaller increases in the capacity of those ecosystems to
Decomposition of litter produced under elevated CO2: dependence on plant species and nutrient supply
We investigated the effect of CO2 concentration and soilnutrient availability during growth on the subsequent decomposition andnitrogen (N) release from litter of four annual grasses that differ inresource requirements
Elevated CO2 and nutrient addition after soil N cycling and N trace gas fluxes with early season wet-up in a California annual grassland
We examined the effects of growth carbon dioxide (CO2)concentration and soil nutrient availability on nitrogen (N)transformations and N trace gas fluxes in California grasslandmicrocosms during early-season wet-up, a time
The fate of carbon in grasslands under carbon dioxide enrichment
The concentration of carbon dioxide (CO2) in the Earth’s atmosphere is rising rapidly1, with the potential to alter many ecosystem processes. Elevated CO2 often stimulates photosynthesis2, creating the possibility
Soil heterogeneity and plant competition in anannual grassland
Variation in competitive ability due to variation in soil characteristics is one possible mechanism allowing the local coexistence of plant species. We measured soil water, depth, and nitrogen pools
Decreased leaf‐miner abundance in elevated CO2: Reduced leaf quality and increased parasitoid attack
Most studies on the effects of elevated CO2 have focused on the effects on plant growth and ecosystem processes. Fewer studies have examined the effects of elevated CO2 on
Ecosystem responses to rising atmospheric CO2: feedbacks through the nitrogen cycle
This chapter discusses the mechanisms through which elevated CO2 can cause changes in soil nitrogen cycling. Rising atmospheric CO2 could alter soil nitrogen (N) cycling, shaping the responses of
Elevated CO2 increases nitrogen fixation and decreases soil nitrogen mineralization in Florida scrub oak
We report changes in nitrogen cycling in Florida scrub oak in response to elevated atmospheric CO2 during the first 14 months of experimental treatment. Elevated CO2 stimulated above-ground growth, nitrogen
Soil microbiota in two annual grasslands: responses to elevated atmospheric CO2
We measured soil bacteria, fungi, protozoa, nematodes, and biological activity in serpentine and sandstone annual grasslands after 4 years of exposure to elevated atmospheric CO2. Measurements were made during
Effects of elevated CO2 on nutrient cycling in forests
This paper presents reviews on: the nutrient responses to elevated CO 2 in open-top chamber and their potential effects on stand level cycling through logic and simulation modelling; and
Water, nitrogen, rising atmospheric CO2, and terrestrial productivity
The functioning of” plants in terrestrial ecosystems must satisfy different constraints imposed by the physical environment. The prevention of embolism and conservation of internal water constrain stomatal behavior and
Terrestrial and freshwater ecosystems: impacts of global change
Humans are altering the environment in many ways. While local environmental damage (landfills, oil spills, urban smog) is still prevalent, we now also realize that human activities are altering
Effects of elevated carbon dioxide on soils in a Florida scrub oak ecosystem
The results of a 3-yr study on the effects of elevated CO2 on soil N and P, soil pCO2, and calculated CO2 efflux in a fire-regenerated Florida scrub oak
Contrasting effects of elevated CO 2 on old and new soil carbon pools
Soil organic carbon (SOC) is the largest reservoir of organic carbon in the terrestrial biosphere. Though the influence of increasing atmospheric CO2 on net primary productivity, on the flow
Elevated atmospheric CO2 stimulates aboveground biomass in a fire‐regenerated scrub‐oak ecosystem
The effect of elevated atmospheric CO2 concentration (Ca) on the aboveground biomass of three oak species, Quercus myrtifolia, Q. geminata, and Q. chapmanii, was estimated nondestructively using allometric relationships
Evapotranspiration and soil water content in a scrub‐oak woodland under carbon dioxide enrichment
Leaf conductance often decreases in response to elevated atmospheric CO2 concentration (Ca) potentially leading to changes in hydrology. We describe the hydrological responses of Florida scrub oak to elevated
Elevated carbon dioxide and litter decomposition in California annual grasslands: which mechanisms matter?
To date, most research that has examined the effect of elevated atmospheric carbon dioxide concentration ([CO2]) on litter decomposition has focused on changes in the leaf litter quality of
Acclimation of photosynthesis and respiration to elevated atmospheric CO2 in two Scrub Oaks
For two species of oak, we determined whether increasing atmospheric CO2 concentration (Ca) would decrease leaf mitochondrial respiration (R) directly, or indirectly owing to their growth in elevated Ca,
Extensive belowground carbon storage supports roots and mycorrhizae in regenerating scrub oaks
Portions of a regenerating scrub oak ecosystem were enclosed in open-top chambers and exposed to elevated CO2. The distinct 13C signal of the supplemental CO2 was used to trace
The effect of single tree species on soil microbial activities related to C and N cycling in the Siberian artificial afforestation experiment
The effects of grassland conversion to forest vegetation and of individual tree species on microbial activity in Siberia are largely unstudied. Here, we examined the effects of the six
Elevated atmospheric CO2 lowers herbivore abundance, but increases leaf abscission rates
Increased levels of atmospheric carbon dioxide (CO2) are likely to affect the trophic relationships that exist between plants, their herbivores and the herbivores’ natural enemies. This study takes advantage
Direct and indirect effects of elevated CO2 on transpiration from Quercus myrtifolia in a scrub‐oak ecosystem
Elevated atmospheric carbon dioxide (Ca) usually reduces stomatal conductance, but the effects on plant transpiration in the field are not well understood. Using constant-power sap flow gauges, we measured
Toward more realistic projections of soil carbon dynamics by Earth system models
Soil carbon (C) is a critical component of Earth system models (ESMs), and its diverse representations are a major source of the large spread across models in the terrestrial
Changing permafrost in a warming world and feedbacks to the Earth system
The permafrost component of the cryosphere is changing dramatically, but the permafrost region is not well monitored and the consequences of change are not well understood. Changing permafrost interacts
Metagenomics reveals pervasive bacterial populations and reduced community diversity across the Alaska tundra ecosystem
How soil microbial communities contrast with respect to taxonomic and functional composition within and between ecosystems remains an unresolved question that is central to predicting how global anthropogenic change will affect soil functioning and services. In particular, it remains unclear
Stable isotope probing with 18O-water to investigate microbial growth and death in environmental samples
Growth and mortality of microorganisms have been characterized through DNA stable isotope probing (SIP) with 18O-water in soils from a range of ecosystems. Conventional SIP has been improved by
Limits to soil carbon stability; Deep, ancient soil carbon decomposition stimulated by new labile organic inputs
Carbon (C) buried deep in soil (below 1 m) is often hundreds to thousands of years old, though the stability and sensitivity of this deep C to environmental change are
Disturbance and element interactions
This paper discusses the disturbances within and between ecosystems that result in element redistribution involving element transport in the biosphere, hydrosphere, lithosphere and atmosphere. It also discusses the disturbances
Nitrogen stable isotope composition of leaves and roots of plants growing in a forest and a meadow
In controlled N-nutrition experiments, differences in δ 15N composition of leaves and roots are regularly found. In this paper we report results from a survey of nitrogen stable isotope
Tree species of the central Amazon and soil moisture alter stable isotope composition of nitrogen and oxygen in nitrous oxide evolved from soil
The use of stable isotopes of N and O in N2O has been proposed as a way to better constrain the global budget of atmospheric N2O and to better
Interactive effects of tree species and soil moisture on methane consumption
Methane consumption by temperate forest soils is a major sink for this important greenhouse gas, but little is known about how tree species influence CH4 uptake by soils. Here,
Mycorrhizal controls on belowground litter quality
Plant productivity and ecosystem productivity are strongly influenced by nutrient availability, which is largely determined by the decomposition rate of plant litter. Belowground litter inputs (dead roots, mycorrhizae, and
The effects of elevated CO2 on nutrient distribution in a fire‐adapted scrub oak forest
Elevated carbon dioxide (CO2) caused greater accumulation of carbon (C) and nutrients in both vegetation and O horizons over a 5-yr sampling period in a scrub oak ecosystem in
Ectomycorrhizal colonization, biomass, and production in a regenerating scrub oak forest in response to elevated CO2
The effects of CO2 elevation on the dynamics of fine root (FR) mass and ectomycorrhizal (EM) mass and colonization were studied in situ in a Florida scrub oak system
Nitrogen and climate change
Models project that land ecosystems may be able take up a considerable proportion of the carbon dioxide released by human activities, thereby counteracting the anthropogenic emissions. In their Perspective,
Below‐ground process responses to elevated CO2 and temperature: a discussion of observations, measurement methods, and models
Rising atmospheric CO2 and temperatures are probably altering ecosystem carbon cycling, causing both positive and negative feedbacks to climate. Below-ground processes play a key role in the global carbon
CO2 elicits long-term decline in nitrogen fixation
Rising atmospheric carbon dioxide (Ca), a product of fossil fuel burning, land-use change, and cement manufacture, is expected to cause a large carbon sink in land ecosystems, partly mitigating
Progressive nitrogen limitation of ecosystem responses to rising atmospheric carbon dioxide
A highly controversial issue in global biogeochemistry is the regulation of terrestrial carbon (C) sequestration by soil nitrogen (N) availability. This controversy translates into great uncertainty in predicting future
Tree species effects on potential production and consumption of carbon dioxide, methane, and nitrous oxide: the Siberian afforestation experiment
Changes in tree species composition could affect how forests produce and consume greenhouse gases, because the soil microorganisms that carry out these biogeochemical transformations are often sensitive to plant
Global change, nitrification, and denitrification: a review
[1] We reviewed responses of nitrification, denitrification, and soil N2O efflux to elevated CO2, N availability, and temperature, based on published experimental results. We used meta-analysis to estimate the magnitude
Effects of elevated CO2 and herbivore damage on litter quality in a scrub oak ecosystem
Atmospheric CO2 concentrations have increased dramatically over the last century and continuing increases are expected to have significant, though currently unpredictable, effects on ecosystems. One important process that may
Carbon-nitrogen interactions in terrestrial ecosystems in response to rising atmospheric carbon dioxide
Interactions involving carbon (C) and nitrogen (N) likely modulate terrestrial ecosystem responses to elevated atmospheric carbon dioxide (CO2) levels at scales from the leaf to the globe and from
Nitrogen cycling during seven years of atmospheric CO2 enrichment in a scrub oak woodland
Experimentally increasing atmospheric CO2 often stimulates plant growth and ecosystem carbon (C) uptake. Biogeochemical theory predicts that these initial responses will immobilize nitrogen (N) in plant biomass and soil
Element interactions limit soil carbon storage
Rising levels of atmospheric CO2 are thought to increase C sinks in terrestrial ecosystems. The potential of these sinks to mitigate CO2 emissions, however, may be constrained by nutrients.
Rapid root closure after fire limits fine root responses to elevated atmospheric CO2 in a scrub oak ecosystem in central Florida, USA
Elevated atmospheric carbon dioxide (CO2) often stimulates the growth of fine roots, yet there are few reports of responses of intact root systems to long-term CO2 exposure. We investigated
Managing forests infested by spruce beetles in south-central Alaska: effects on nitrogen availability, understory biomass, and spruce regeneration
In Alaska, an outbreak of spruce beetles (Dendroctonus rufipennis) recently infested over one million hectares of spruce (Picea spp.) forest. As a result, land management agencies have applied different
Tree species and moisture effects on soil sources of N2O: Quantifying contributions from nitrification and denitrification with 18O isotopes
[1] Nitrous oxide (N2O) is an important greenhouse gas and participates in the destruction of stratospheric ozone. Soil bacteria produce N2O through denitrification and nitrification, but these processes differ radically
Carbon and nitrogen stable isotopes in forest soils of Siberia
The labeled atoms of carbon and nitrogen are widely used in biology, biochemistry, and soil science. Both radioactive (14C) and stable (12C, 13C,15N) isotopes are used as such labels.
Ectomycorrhizal colonization slows root decomposition: the post‐mortem fungal legacy
The amount of carbon plants allocate to mycorrhizal symbionts exceeds that emitted by human activity annually. Senescent ectomycorrhizal roots represent a large input of carbon into soils, but their
Several components of global change alter nitrifying and denitrifying activities in an annual grassland
1. The effects of global change on below-ground processes of the nitrogen (N) cycle have repercussions for plant communities, productivity and trace gas effluxes. However, the interacting effects of different
C and N availability affects the 15N natural abundance of the soil microbial biomass across a cattle manure gradient
The availability of C and N to the soil microbial biomass is an important determinant of the rates of soil N transformations. Here, we present evidence that changes in
Stable isotope discrimination during soil denitrification: Production and consumption of nitrous oxide
[1] Measuring the stable isotope composition of nitrous oxide (N2O) evolved from soil could improve our understanding of the relative contributions of the main microbial processes (nitrification and denitrification) responsible
Interactions between plant growth and soil nutrient cycling under elevated CO2: A meta‐analysis
Free air carbon dioxide enrichment (FACE) and open top chamber (OTC) studies are valuable tools for evaluating the impact of elevated atmospheric CO2 on nutrient cycling in terrestrial ecosystems.
13C and 15N natural abundance of the soil microbial biomass
Stable isotope analysis is a powerful tool in the study of soil organic matter formation. It is often observed that more decomposed soil organic matter is 13C, and especially
Belowground food webs in a changing climate
Amidst a network of tunnels and pores, soil organisms recycle carbon and nutrients. They mix plant litter and detritus, causing changes in soil structure that can ultimately influence the
Root biomass and nutrient dynamics in a scrub-oak ecosystem under the influence of elevated atmospheric CO2
Elevated CO2 can increase fine root biomass but responses of fine roots to exposure to increased CO2 over many years are infrequently reported. We investigated the effect of elevated
Elevated CO2 mitigates the adverse effects of drought on daytime net ecosystem CO2 exchange and photosynthesis in a Florida scrub-oak ecosystem
Drought is a normal, recurrent feature of climate. In order to understand the potential effect of increasing atmospheric CO2 concentration (C a) on ecosystems, it is essential to determine
Altered soil microbial community at elevated CO2 leads to loss of soil carbon
Increased carbon storage in ecosystems due to elevated CO2 may help stabilize atmospheric CO2 concentrations and slow global warming. Many field studies have found that elevated CO2 leads to
Impacts of hurricane Frances on Florida scrub‐oak ecosystem processes: Defoliation, net CO2 exchange and interactions with elevated CO2
Hurricane disturbances have profound impacts on ecosystem structure and function, yet their effects on ecosystem CO2 exchange have not been reported. In September 2004, our research site on a
Soil responses to management, increased precipitation, and added nitrogen in ponderosa pine forests
Forest management, climatic change, and atmospheric N deposition can affect soil biogeochemistry, but their combined effects are not well understood. We examined the effects of water and N amendments
Natural abundance δ15N and δ13C of DNA extracted from soil
We report the first simultaneous measurements of δ15N and δ13C of DNA extracted from surface soils. The isotopic composition of DNA differed significantly among nine different soils. The δ13C
15N enrichment as an integrator of the effects of C and N on microbial metabolism and ecosystem function
Organic carbon (C) and nitrogen (N) are essential for heterotrophic soil microorganisms, and their bioavailability strongly influences ecosystem C and N cycling. We show here that the natural 15N
Soil science: Scavenging for scrap metal
Organisms acquire some elements from the environment with ease. Diffusion alone often provides enough carbon dioxide, oxygen and water. But getting other elements requires more effort, spurring unique evolutionary
Nitrogen source influences natural abundance 15N of Escherichia coli
Escherichia coli cells were forced to mineralize or assimilate nitrogen in vitro by manipulating substrate carbon and nitrogen availability. When grown on an organic nitrogen source, E. coli cells
Restoration of a ponderosa pine forest increases soil CO2 efflux more than either water or nitrogen additions
1. Ecological restoration often involves returning ecosystem structure to some predisturbance reference state, but ecosystem function must also recover if restoration efforts are to be self-sustaining over the long
Long‐term impact of a stand‐replacing fire on ecosystem CO2 exchange of a Ponderosa pine forest
Ponderosa pine (Pinus ponderosa) forests of the southwestern United States are a mosaic of stands where undisturbed forests are carbon sinks, and stands recovering from wildfires may be sources
Changing land use reduces soil CH4 uptake by altering biomass and activity but not composition of high‐affinity methanotrophs
Forest ecosystems assimilate more CO2 from the atmosphere and store more carbon in woody biomass than most nonforest ecosystems, indicating strong potential for afforestation to serve as a carbon
Genetic and environmental controls of microbial communities on leaf litter in streams
1. Despite the importance of microorganisms for leaf litter decomposition in streams, little is known about which factors affect community composition of bacterial and fungal communities. Standard morphological techniques
Effects of flow restoration and exotic species removal on recovery of native fish: lessons from a dam decommissioning
Flow diversion and invasive species are two major threats to freshwater ecosystems, threats that restoration efforts attempt to redress. Yet, few restoration projects monitor whether removal of these threats
Ecogeomorphic feedbacks in regrowth of travertine step-pool morphology after dam decommissioning, Fossil Creek, Arizona
The linkages between fluvial geomorphology and aquatic ecosystems are commonly conceptualized as a one-way causal chain in which geomorphic processes create the physical template for ecological dynamics. In streams
Coupling stable isotope studies with food web manipulations to predict the effects of exotic fish: lessons from Cuatro Ciénegas, Mexico
1. Exotic species threaten native species worldwide, but their impacts are difficult to predict. 2.Stable isotope analysis was combined with field competition experiments to predict how an invasive African cichlid
Prevalence of antibiotic-resistant E. coli in retail chicken: comparing conventional, organic, kosher, and raised without antibiotics
Retail poultry products are known sources of antibiotic-resistant Escherichia coli, a major human health concern. Consumers have a range of choices for poultry, including conventional, organic, kosher, and raised without
The Influence of Time and Plant Species on the Composition of the Decomposing Bacterial Community in a Stream Ecosystem
Foliar chemistry influences leaf decomposition, but little is known about how litter chemistry affects the assemblage of bacterial communities during decomposition. Here we examined relationships between initial litter chemistry
Restoring forest structure and process stabilizes forest carbon in wildfire-prone southwestern ponderosa pine forests
Changing climate and a legacy of fire-exclusion have increased the probability of high-severity wildfire, leading to an increased risk of forest carbon loss in ponderosa pine forests in the
Carbon protection and fire risk reduction: toward a full accounting of forest carbon offsets
Management of forests for carbon uptake is an important tool in the effort to slow the increase in atmospheric CO2 and global warming. However, some current policies governing forest
Priming depletes soil carbon and releases nitrogen in a scrub-oak ecosystem exposed to elevated CO 2
Elevated atmospheric CO2 tends to stimulate plant productivity, which could either stimulate or suppress the processing of soil carbon, thereby feeding back to atmospheric CO2 concentrations. We employed an
Disturbance, rainfall and contrasting species responses mediated aboveground biomass response to 11 years of CO2 enrichment in a Florida scrub‐oak ecosystem
This study reports the aboveground biomass response of a fire-regenerated Florida scrub-oak ecosystem exposed to elevated CO2 (1996–2007), from emergence after fire through canopy closure. Eleven years exposure to
Persistent effects of fire-induced vegetation change on energy partitioning and evapotranspiration in ponderosa pine forests
We compared energy fluxes between a site converted from ponderosa pine (Pinus ponderosa) forest to sparse grassland by a severe wildfire 10 years ago and a nearby, unburned forest.
Assessing the effect of elevated carbon dioxide on soil carbon: a comparison of four meta‐analyses
Soil is the largest reservoir of organic carbon (C) in the terrestrial biosphere and soil C has a relatively long mean residence time. Rising atmospheric carbon dioxide (CO2) concentrations
Does deep soil N availability sustain long‐term ecosystem responses to elevated CO2?
A scrub-oak woodland has maintained higher aboveground biomass accumulation after 11 years of atmospheric CO2 enrichment (ambient +350 μmol CO2 mol−1), despite the expectation of strong nitrogen (N) limitation at the site.
Seeing the forest for the trees: long‐term exposure to elevated CO2 increases some herbivore densities
The effects of elevated CO2 on plant growth and insect herbivory have been frequently investigated over the past 20 years. Most studies have shown an increase in plant growth,
Relationships between C and N availability, substrate age, and natural abundance 13 C and 15 N signatures of soil microbial biomass in a semiarid climate
Soil microbial organisms are central to carbon (C) and nitrogen (N) transformations in soils, yet not much is known about the stable isotope composition of these essential regulators of
Accounting for risk in valuing forest carbon offsets
Background Forests can sequester carbon dioxide, thereby reducing atmospheric concentrations and slowing global warming. In the U.S., forest carbon stocks have increased as a result of regrowth following land
Responses of soil nitrogen cycling to the interactive effects of elevated CO2 and inorganic N supply
Despite increasing interest in the effects of climate change on soil processes, the response of nitrification to elevated CO2remains unclear. Responses may depend on soil nitrogen (N) status, and
Carbon and water fluxes from ponderosa pine forests disturbed by wildfire and thinning
Disturbances alter ecosystem carbon dynamics, often by reducing carbon uptake and stocks. We compared the impact of two types of disturbances that represent the most likely future conditions of
A call to investigate drivers of soil organic matter retention vs. mineralization in a high CO 2 world
Understanding how elevated atmospheric CO2 alters the formation and decomposition of soil organic carbon (SOC) is important but challenging. If elevated CO2 induces even small changes in rates of
Effects of interactive global changes on methane uptake in an annual grassland
[1] The future size of the terrestrial methane (CH4) sink of upland soils remains uncertain, along with potential feedbacks to global warming. Much of the uncertainty lies in our lack
Biophysical considerations in forestry for climate protection
Forestry – including afforestation (the planting of trees on land where they have not recently existed), reforestation, avoided deforestation, and forest management – can lead to increased sequestration of
Response of terrestrial CH4 uptake to interactive changes in precipitation and temperature along a climatic gradient
We determined the response of terrestrial methane (CH4) uptake to 4 years of full-factorial manipulations of precipitation and temperature in four ecosystems along a 50 km warm and dry to cold
8: Measuring Nitrification, Denitrification, and Related Biomarkers in Terrestrial Geothermal Ecosystems
Research on the nitrogen biogeochemical cycle in terrestrial geothermal ecosystems has recently been energized by the discovery of thermophilic ammonia-oxidizing archaea (AOA). This chapter describes methods that have been
Probing carbon flux patterns through soil microbial metabolic networks using parallel position-specific tracer labeling
In order to study controls on metabolic processes in soils, we determined the dynamics of 13CO2 production from two position-specific 13C-labeled pyruvate isotopologues in the presence and absence of
Responses of terrestrial ecosystems to temperature and precipitation change: a meta‐analysis of experimental manipulation
Global mean temperature is predicted to increase by 2–7 °C and precipitation to change across the globe by the end of this century. To quantify climate effects on ecosystem processes,
A meta-analysis of responses of soil biota to global change
Global environmental changes are expected to impact the abundance of plants and animals aboveground, but comparably little is known about the responses of belowground organisms. Using meta-analysis, we synthesized
Plant− Soil Distribution of Potentially Toxic Elements in Response to Elevated Atmospheric CO2
The distribution of contaminant elements within ecosystems is an environmental concern because of these elements’ potential toxicity to animals and plants and their ability to hinder microbial ecosystem services.
Testing interactive effects of global environmental changes on soil nitrogen cycling
Responses of soil nitrogen (N) cycling to simultaneous and potentially interacting global environmental changes are uncertain. Here, we investigated the combined effects of elevated CO2, warming, increased precipitation and
Global change could amplify fire effects on soil greenhouse gas emissions
Background Little is known about the combined impacts of global environmental changes and ecological disturbances on ecosystem functioning, even though such combined impacts might play critical roles in shaping
Wildfire reduces carbon dioxide efflux and increases methane uptake in ponderosa pine forest soils of the southwestern USA
Severe wildfire may cause long-term changes in the soil-atmosphere exchange of carbon dioxide and methane, two gases known to force atmospheric warming. We examined the effect of a severe
Increased soil emissions of potent greenhouse gases under increased atmospheric CO2
Increasing concentrations of atmospheric carbon dioxide (CO2) can affect biotic and abiotic conditions in soil, such as microbial activity and water content1, 2. In turn, these changes might be
Ammonia oxidation, denitrification and dissimilatory nitrate reduction to ammonium in two US Great Basin hot springs with abundant ammonia‐oxidizing archaea
Many thermophiles catalyse free energy-yielding redox reactions involving nitrogenous compounds; however, little is known about these processes in natural thermal environments. Rates of ammonia oxidation, denitrification and dissimilatory nitrate
Modeling soil metabolic processes using isotopologue pairs of position-specific 13 C-labeled glucose and pyruvate
Most organic carbon (C) in soils eventually turns into CO2 after passing through microbial metabolic pathways, while providing cells with energy and biosynthetic precursors. Therefore, detailed insight into these
Responses of soil cellulolytic fungal communities to elevated atmospheric CO2 are complex and variable across five ecosystems
Elevated atmospheric CO2 generally increases plant productivity and subsequently increases the availability of cellulose in soil to microbial decomposers. As key cellulose degraders, soil fungi are likely to be
Effect of temperature on metabolic activity of intact microbial communities: evidence for altered metabolic pathway activity but not for increased maintenance respiration and reduced carbon use efficiency
We used metabolic tracers and modeling to analyze the response of soil metabolism to a sudden change in temperature from 4 to 20 °C. We hypothesized that intact soil microbial
Responses of ecosystem carbon cycling to climate change treatments along an elevation gradient
Global temperature increases and precipitation changes are both expected to alter ecosystem carbon (C) cycling. We tested responses of ecosystem C cycling to simulated climate change using field manipulations
Potential role of Thermus thermophilus and T. oshimai in high rates of nitrous oxide (N2O) production in∼ 80° C hot springs in the US Great Basin
Ambient nitrous oxide (N2O) emissions from Great Boiling Spring (GBS) in the US Great Basin depended on temperature, with the highest flux, 67.8 ± 2.6 μmol N2O-N m−2 day−1, occurring in the large source
Stable carbon isotope fractionation in chlorinated ethene degradation by bacteria expressing three toluene oxygenases
One difficulty in using bioremediation at a contaminated site is demonstrating that biodegradation is actually occurring in situ. The stable isotope composition of contaminants may help with this, since
RETRACTED ARTICLE: CO2 effects on plant nutrient concentration depend on plant functional group and available nitrogen: a meta-analysis
Elevated CO2 is expected to lower plant nutrient concentrations via carbohydrate dilution and increased nutrient use efficiency. Elevated CO2 consistently lowers plant foliar nitrogen, but there is no consensus
Ecosystem services: Valuing ecosystems for climate
Ecosystems regulate climate through biogeochemistry and biophysics, but current policies only recognize biogeochemical influences. A new proposal to include biophysical effects changes the climate value of ecosystems, and sets
Common bacterial responses in six ecosystems exposed to 10 years of elevated atmospheric carbon dioxide
Six terrestrial ecosystems in the USA were exposed to elevated atmospheric CO2 in single or multifactorial experiments for more than a decade to assess potential impacts. We retrospectively assessed
Biogeochemical and ecological feedbacks in grassland responses to warming
Plant growth often responds rapidly to experimentally simulated climate change1, 2. Feedbacks can modulate the initial responses3, but these feedbacks are difficult to detect when they operate on long
A global synthesis reveals biodiversity loss as a major driver of ecosystem change
Evidence is mounting that extinctions are altering key processes important to the productivity and sustainability of Earth’s ecosystems1, 2, 3, 4. Further species loss will accelerate change in ecosystem
Effects of multiple global change treatments on soil N2O fluxes
Global environmental changes are expected to alter ecosystem carbon and nitrogen cycling, but the interactive effects of multiple simultaneous environmental changes are poorly understood. Effects of these changes on
Sinks for nitrogen inputs in terrestrial ecosystems: a meta-analysis of 15N tracer field studies
Effects of anthropogenic nitrogen (N) deposition and the ability of terrestrial ecosystems to store carbon (C) depend in part on the amount of N retained in the system and
Recovery of ponderosa pine ecosystem carbon and water fluxes from thinning and stand‐replacing fire
Carbon uptake by forests is a major sink in the global carbon cycle, helping buffer the rising concentration of CO2 in the atmosphere, yet the potential for future carbon
A comprehensive census of microbial diversity in hot springs of Tengchong, Yunnan Province China using 16S rRNA gene pyrosequencing
The Rehai and Ruidian geothermal fields, located in Tengchong County, Yunnan Province, China, host a variety of geochemically distinct hot springs. In this study, we report a comprehensive, cultivation-independent
Aligning ecology and markets in the forest carbon cycle
A forest carbon (C) offset is a quantifiable unit of C that is commonly developed at the local or regional project scale and is designed to counterbalance anthropogenic C
Increased greenhouse-gas intensity of rice production under future atmospheric conditions
Increased atmospheric CO2 and rising temperatures are expected to affect rice yields and greenhouse-gas (GHG) emissions from rice paddies1, 2, 3, 4. This is important, because rice cultivation is
Male circumcision significantly reduces prevalence and load of genital anaerobic bacteria
Male circumcision reduces female-to-male HIV transmission. Hypothesized mechanisms for this protective effect include decreased HIV target cell recruitment and activation due to changes in the penis microbiome. We compared
Element Pool Changes within a Scrub-Oak Ecosystem after 11 Years of Exposure to Elevated CO 2
The effects of elevated CO2 on ecosystem element stocks are equivocal, in part because cumulative effects of CO2 on element pools are difficult to detect. We conducted a complete
Wide distribution of autochthonous branched glycerol dialkyl glycerol tetraethers (bGDGTs) in US Great Basin hot springs
Branched glycerol dialkyl glycerol tetraethers (bGDGTs) are membrane-spanning lipids that likely stabilize membranes of some bacteria. Although bGDGTs have been reported previously in certain geothermal environments, it has been
Riparian Vegetation and Water Quality Monitoring: Middle Fossil Creek Riparian Habitat Protection and Restoration Project Final Report: Monitoring Data and Analysis, 2010-2014 (Task 4) Revised Final
The objective of the Fossil Creek Riparian Vegetation, Water Quality and Visitor Use Monitoring Plan (NAU 2010) is to determine the effectiveness of the Middle Fossil Creek Riparian Habitat
Restoring Fossil Creek
At 6 A.M. on the first day of winter break, a van full of high school stu- dents and teachers set out for Fossil Creek in Arizona to conduct
Interactions between geomorphology and ecosystem processes in travertine streams–implications for dam decommissioning in Fossil Creek, Arizona.
Travertine deposits of calcium carbonate can dominate channel geomorphology in streams where travertine deposition creates a distinct morphology characterized by travertine terraces, steep waterfalls, and large pools. Algae and
Litter quality, stream characteristics and litter diversity influence decomposition rates and macroinvertebrates
1. We examined the relative importance of litter quality and stream characteristics in determining decomposition rate and the macroinvertebrate assemblage living on autumn- shed leaves. 2. We compared the
Down Go the Dams
The article focuses on the decommissioning of dams across the United States. Many dams were built after World War II to provide sources of hydraulic power. Now that these
Measuring terrestrial subsidies to aquatic food webs using stable isotopes of hydrogen
Understanding river food webs requires distinguishing energy derived from primary production in the river itself (autochthonous) from that produced externally (allochthonous), yet there are no universally applicable and reliable
Influences of travertine dam formation on leaf litter decomposition and algal accrual
At the time of this study Fossil Creek was being considered as a site for the restoration of a native fish assemblage, however there was concern amongst fisheries managers
The distribution and abundance of archaeal tetraether lipids in US Great Basin hot springs
Isoprenoidal glycerol dialkyl glycerol tetra ethers (iGDGTs) are core membrane lipids of many archaea that enhance the integrity of cytoplasmic membranes in extreme environments. We examined the iGDGT profiles
A positive relationship between the abundance of ammonia oxidizing archaea and natural abundance δ 15 N of ecosystems
We present a significant relationship between the natural abundance isotopic composition of ecosystem pools and the abundance of a microbial gene. Natural abundance 15N of soils and soil DNA
The effects of 11 yr of CO2 enrichment on roots in a Florida scrub-oak ecosystem
Uncertainty surrounds belowground plant responses to rising atmospheric CO2 because roots are difficult to measure, requiring frequent monitoring as a result of fine root dynamics and long-term monitoring as
Direct and legacy effects of long‐term elevated CO2 on fine root growth and plant–insect interactions
Increasing atmospheric CO2 concentrations alter leaf physiology, with effects that cascade to communities and ecosystems. Yet, responses over cycles of disturbance and recovery are not well known, because most
Cumulative response of ecosystem carbon and nitrogen stocks to chronic CO2 exposure in a subtropical oak woodland
Rising atmospheric carbon dioxide (CO2) could alter the carbon (C) and nitrogen (N) content of ecosystems, yet the magnitude of these effects are not well known. We examined C
Fire, hurricane and carbon dioxide: effects on net primary production of a subtropical woodland
Disturbance affects most terrestrial ecosystems and has the potential to shape their responses to chronic environmental change. Scrub-oak vegetation regenerating from fire disturbance in subtropical Florida was exposed to
Using metabolic tracer techniques to assess the impact of tillage and straw management on microbial carbon use efficiency in soil
Tillage practices and straw management can affect soil microbial activities with consequences for soil organic carbon (C) dynamics. Microorganisms metabolize soil organic C and in doing so gain energy
Plant community feedbacks and long-term ecosystem responses to multi-factored global change
While short-term plant responses to global change are driven by physiological mechanisms, which are represented relatively well by models, long-term ecosystem responses to global change may be determined by
Multiple-Element Isotope Probes, NanoSIMS, and the Functional Genomics of Microbial Carbon Cycling in Soils in Response to Chronic Climatic Change
For the past several decades, connecting biogeochemistry and microbial genomics has been a high priority in microbial ecology. Yet, techniques that actually link element flow and genomic information are
Faster decomposition under increased atmospheric CO2 limits soil carbon storage
Soils contain the largest pool of terrestrial organic carbon (C) and are a major source of atmospheric carbon dioxide (CO2). Thus, they may play a key role in modulating
Seasonal patterns in microbial communities inhabiting the hot springs of Tengchong, Yunnan Province, China
Studies focusing on seasonal dynamics of microbial communities in terrestrial and marine environments are common; however, little is known about seasonal dynamics in high-temperature environments. Thus, our objective was
The semen microbiome and its relationship with local immunology and viral load in HIV infection
Semen is a major vector for HIV transmission, but the semen HIV RNA viral load (VL) only correlates moderately with the blood VL. Viral shedding can be enhanced by
Staphylococcus aureus and the ecology of the nasal microbiome
The human microbiome can play a key role in host susceptibility to pathogens, including in the nasal cavity, a site favored by Staphylococcus aureus. However, what determines our resident
What Constitutes Plant-Available Molybdenum in Sandy Acidic Soils?
Molybdenum (Mo) is critical for the function of enzymes related to nitrogen cycling. Concentrations of Mo are very low in sandy, acidic soils, and biologically available Mo is only
Salmon carcasses influence genetic linkages between forests and streams
Biodiversity at many scales (functional group, species, genetic) can result in emergent ecological patterns. Here we explore the influence of tree genotypic variation and diversity on in-stream ecosystem processes
The effect of fertilization levels and genetic deployment on the isotopic signature, constituents, and chemistry of soil organic carbon in managed loblolly pine (Pinus taeda L.) forests
Soil organic carbon (SOC) mass and its constituents, chemistry, and isotopic signatures (Δ14C, δ13C) were examined for two different loblolly pine (Pinus taeda L.) research installations located in north-central
The carbon balance of reducing wildfire risk and restoring process: an analysis of 10-year post-treatment carbon dynamics in a mixed-conifer forest
Forests sequester carbon from the atmosphere, helping mitigate climate change. In fire-prone forests, burn events result in direct and indirect emissions of carbon. High fire-induced tree mortality can cause
Nitrogen fertilization reduces yield declines following no-till adoption
Conservation agriculture (CA) has been promoted as a method of sustainable intensification and climate change mitigation and is being widely practiced and implemented globally. However, no-till (NT), a fundamental
When does no-till yield more? A global meta-analysis
No-till agriculture represents a relatively widely adopted management system that aims to reduce soil erosion, decrease input costs, and sustain long-term crop productivity. However, its impacts on crop yields
Proximate controls on semiarid soil greenhouse gas fluxes across 3 million years of soil development
Soils are important sources and sinks of three greenhouse gases (GHGs): carbon dioxide (CO2), methane (CH4), and nitrous oxide (N2O). However, it is unknown whether semiarid landscapes are important
Differences in Ecosystem Carbon Distribution and Nutrient Cycling Linked to Forest Tree Species Composition in a Mid-Successional Boreal Forest
In the boreal forest of Alaska, increased fire severity associated with climate change is expanding deciduous forest cover in areas previously dominated by black spruce (Picea mariana). Needle-leaf conifer
Experimental Warming Alters Productivity and Isotopic Signatures of Tundra Mosses
In the tundra, mosses play an important functional role regulating belowground and ecosystem processes, but there is still considerable uncertainty about how tundra moss communities will respond to climate
Denitrifying and diazotrophic community responses to artificial warming in permafrost and tallgrass prairie soils
Increasing temperatures have been shown to impact soil biogeochemical processes, although the corresponding changes to the underlying microbial functional communities are not well understood. Alterations in the nitrogen (N)
Decoupled stoichiometric, isotopic, and fungal responses of an ectomycorrhizal black spruce forest to nitrogen and phosphorus additions
Many northern forests are limited by nitrogen (N) availability, slight changes in which can have profound effects on ecosystem function and the activity of ectomycorrhizal (EcM) fungi. Increasing N
Reduced greenhouse gas mitigation potential of no-tillage soils through earthworm activity
Concerns about rising greenhouse gas (GHG) concentrations have spurred the promotion of no-tillage practices as a means to stimulate carbon storage and reduce CO2 emissions in agro-ecosystems. Recent research
Water from air: an overlooked source of moisture in arid and semiarid regions
Water drives the functioning of Earth’s arid and semiarid lands. Drylands can obtain water from sources other than precipitation, yet little is known about how non-rainfall water inputs influence
Penile Microbiota and Female Partner Bacterial Vaginosis in Rakai, Uganda
Bacterial vaginosis (BV) is a common vaginal bacterial imbalance associated with risk for HIV and poor gynecologic and obstetric outcomes. Male circumcision reduces BV-associated bacteria on the penis and
Decadal warming causes a consistent and persistent shift from heterotrophic to autotrophic respiration in contrasting permafrost ecosystems
Soil carbon in permafrost ecosystems has the potential to become a major positive feedback to climate change if permafrost thaw increases heterotrophic decomposition. However, warming can also stimulate autotrophic
Application of a two-pool model to soil carbon dynamics under elevated CO2
Elevated atmospheric CO2 concentrations increase plant productivity and affect soil microbial communities, with possible consequences for the turnover rate of soil carbon (C) pools and feedbacks to the atmosphere.
Linking soil bacterial biodiversity and soil carbon stability
Native soil carbon (C) can be lost in response to fresh C inputs, a phenomenon observed for decades yet still not understood. Using dual-stable isotope probing, we show that
Climate killed off the megafauna
The causes of the Pleistocene extinctions of large numbers of megafaunal species in the Northern Hemisphere remain unclear. A range of evidence points to human hunting, climate change, or a combination of both. Using ancient DNA
Pervasive drought legacies in forest ecosystems and their implications for carbon cycle models
The impacts of climate extremes on terrestrial ecosystems are poorly understood but important for predicting carbon cycle feedbacks to climate change. Coupled climate–carbon cycle models typically assume that vegetation
Phylogenetic organization of bacterial activity
Phylogeny is an ecologically meaningful way to classify plants and animals, as closely related taxa frequently have similar ecological characteristics, functional traits and effects on ecosystem processes. For bacteria, however, phylogeny
Temperature sensitivity of organic matter decomposition of permafrost-region soils during laboratory incubations
Permafrost soils contain more than 1300 Pg of carbon (C), twice the amount of C in the atmosphere. Temperatures in higher latitudes are increasing, inducing permafrost thaw and subsequent microbial
Hydrogen Isotopes as a Sentinel of Biological Invasion by the Japanese Beetle, Popillia japonica (Newman)
Invasive species alter ecosystems, threaten native and endangered species, and have negative economic impacts. Knowing where invading individuals are from and when they arrive to a new site can
Biomass offsets little or none of permafrost carbon release from soils, streams, and wildfire: an expert assessment
As the permafrost region warms, its large organic carbon pool will be increasingly vulnerable to decomposition, combustion, and hydrologic export. Models predict that some portion of this release will
Short-term responses of decomposers to flow restoration in Fossil Creek, Arizona, USA
Dam decommissioning projects, although numerous, rarely include complete sets of data before and after restoration for evaluating the ecological consequences of such projects. In this study, we used a
Tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming
Microbial decomposition of soil carbon in high-latitude tundra underlain with permafrost is one of the most important, but poorly understood, potential positive feedbacks of greenhouse gas emissions from terrestrial
Increased wintertime CO2 loss as a result of sustained tundra warming
Permafrost soils currently store approximately 1672 Pg of carbon (C), but as high latitudes warm, this temperature-protected C reservoir will become vulnerable to higher rates of decomposition. In recent decades,
Effects of high levels of antimycin A on aquatic invertebrates in a warmwater Arizona Stream
Restoration of native fish to freshwater habitats often requires nonnative fish removal via chemicals such as antimycin A. Despite widespread use, there are limited field studies quantifying the effects
Cheatgrass invasion alters the abundance and composition of dark septate fungal communities in sagebrush steppe
Invasive, non-native plant species can alter soil microbial communities in ways that contribute to their persistence. While most studies emphasize mycorrhizal fungi, invasive plants also may influence communities of
Nitrogen availability increases in a tundra ecosystem during five years of experimental permafrost thaw
Perennially frozen soil in high latitude ecosystems (permafrost) currently stores 1330-1580 Pg of carbon (C). As these ecosystems warm, the thaw and decomposition of permafrost is expected to release
Seasonal microbial and nutrient responses during a 5-year reduction in the daily temperature range of soil in a Chihuahuan Desert ecosystem
High daily temperature range of soil (DTRsoil) negatively affects soil microbial biomass and activity, but its interaction with seasonal soil moisture in regulating ecosystem function remains unclear. For our
Leaf-litter leachate is distinct in optical properties and bioavailability to stream heterotrophs
Dissolved organic C (DOC) leached from leaf litter contributes to the C pool of stream ecosystems and affects C cycling in streams. We studied how differences in leaf-litter chemistry
Plant genetic identity of foundation tree species and their hybrids affects a litter‑dwelling generalist predator
The effects of plant genetics on predators, especially those not living on the plant itself, are rarely studied and poorly understood. Therefore, we investigated the effect of plant hybridization
Stable carbon isotope analysis reveals widespread drought stress in boreal black spruce forests
Unprecedented rates of climate warming over the past century have resulted in increased forest stress and mortality worldwide. Decreased tree growth in association with increasing temperatures is generally accepted
A pan-Arctic synthesis of CH4 and CO2 production from anoxic soil incubations
Permafrost thaw can alter the soil environment through changes in soil moisture, frequently resulting in soil saturation, a shift to anaerobic decomposition, and changes in the plant community. These
Coupling Between and Among Ammonia Oxidizers and Nitrite Oxidizers in Grassland Mesocosms Submitted to Elevated CO2 and Nitrogen Supply
Many studies have assessed the responses of soil microbial functional groups to increases in atmospheric CO2 or N deposition alone and more rarely in combination. However, the effects of
Biomass and growth potential of Eucalyptus regnans up to 100 m tall
Predicting tree biomass and growth increments via allometric equations is routine in forestry, but this approach is problematic in old-growth forests unless equations are derived from trees spanning the
Climate change and the permafrost carbon feedback
Large quantities of organic carbon are stored in frozen soils (permafrost) within Arctic and sub-Arctic regions. A warming climate can induce environmental changes that accelerate the microbial breakdown of
Circumpolar assessment of permafrost C quality and its vulnerability over time using long-term incubation data
High-latitude ecosystems store approximately 1700 Pg of soil carbon (C), which is twice as much C as is currently contained in the atmosphere. Permafrost thaw and subsequent microbial decomposition
Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences
We present a performance-optimized algorithm, subsampled open-reference OTU picking, for assigning marker gene (e.g., 16S rRNA) sequences generated on next-generation sequencing platforms to operational taxonomic units (OTUs) for microbial
Ominous projections for global antibiotic use in food-animal production
Alexander Fleming famously warned that the ignorant may someday misuse his life-saving discovery—penicillin—and select for resistant bacteria (1). This was prescient given the widespread use of subtherapeutic antibiotics by
Productivity limits and potentials of the principles of conservation agriculture
One of the primary challenges of our time is to feed a growing and more demanding world population with reduced external inputs and minimal environmental impacts, all under more
Global relationship of wood and leaf litter decomposability: the role of functional traits within and across plant organs
Aim Recent meta-analyses have revealed that plant traits and their phylogenetic history influence decay rates of dead wood and leaf litter, but it remains unknown if decay rates of
Stream carbon and nitrogen supplements during leaf litter decomposition: contrasting patterns for two foundation species
Leaf litter decomposition plays a major role in nutrient dynamics in forested streams. The chemical composition of litter affects its processing by microorganisms, which obtain nutrients from litter and
Ecological Restoration of Streams and Rivers: Shifting Strategies and Shifting Goals
Ecological restoration has grown rapidly and now encompasses not only classic ecological theory but also utilitarian concerns, such as preparedness for climate change and provisioning of ecosystem services. Three
A model-based meta-analysis for estimating species-specific wood density and identifying potential sources of variation
Plant functional traits are important determinants of survival and fitness, and wood density (WD) is a key trait linked to mechanical stability, growth rates and drought- and shade-tolerance strategies.
Permafrost degradation stimulates carbon loss from experimentally warmed tundra
A large pool of organic carbon (C) has been accumulating in the Arctic for thousands of years because cold and waterlogged conditions have protected soil organic material from microbial
Permafrost thaw and soil moisture driving CO2 and CH4 release from upland tundra
As permafrost degrades, the amount of organic soil carbon (C) that thaws during the growing season will increase, but decomposition may be limited by saturated soil conditions common in
Using microbial communities and extracellular enzymes to link soil organic matter characteristics to greenhouse gas production in a tidal freshwater wetland
To gain a more mechanistic understanding of how soil organic matter (OM) characteristics can affect carbon mineralization in tidal freshwater wetlands, we conducted a long-term in situ field manipulation
Salinity affects microbial activity and soil organic matter content in tidal wetlands
Climate change-associated sea level rise is expected to cause saltwater intrusion into many historically freshwater ecosystems. Of particular concern are tidal freshwater wetlands, which perform several important ecological functions
Dynamics of extracellular DNA decomposition and bacterial community composition in soil
Microbial necromass is an important source of stabilized organic matter in soil, yet the decomposition dynamics of necromass constituents have not been adequately characterized. This includes DNA, a nutrient-rich
Minor Changes in Soil Bacterial and Fungal Community Composition Occur in Response to Monsoon Precipitation in a Semiarid Grassland
Arizona and New Mexico receive half of their annual precipitation during the summer monsoon season, making this large-scale rain event critical for ecosystem productivity. We used the monsoon rains
Stable nitrogen isotope patterns of trees and soils altered by long-term nitrogen and phosphorus addition to a lowland tropical rainforest
Foliar nitrogen (N) isotope ratios (δ15N) are used as a proxy for N-cycling processes, including the “openness” of the N cycle and the use of distinct N sources, but
The Influence of Altered Rainfall Regimes on Early Season N Partitioning Among Early Phenology Annual Plants, a Late Phenology Shrub, and Microbes in a Semi-arid Ecosystem
In Mediterranean-type ecosystems, nitrogen (N) accumulates in soil during dry summer months and rapidly becomes available during early season rain events. The availability of early season N could depend
Carbon Tradeoffs of Restoration and Provision of Endangered Species Habitat in a Fire-Maintained Forest
Forests are a significant part of the global carbon cycle and are increasingly viewed as tools for mitigating climate change. Natural disturbances, such as fire, can reduce carbon storage.
Soil Microbial Community Responses to a Decade of Warming as Revealed by Comparative Metagenomics
Soil microbial communities are extremely complex, being composed of thousands of low-abundance species (<0.1% of total). How such complex communities respond to natural or human-induced fluctuations, including major perturbations
Switchgrass Response to Cutting Frequency and Biosolids Amendment: Biomass Yield, Feedstock Quality, and Theoretical Ethanol Yield
Biofuel crops have relatively low economic value, and potential to grow them with low-cost inputs is essential for economic viability. Use of biosolids as a fertility source has not
Effects of harvest frequency and biosolids application on switchgrass yield, feedstock quality, and theoretical ethanol yield
Sustainable development of a bioenergy industry will require low-cost, high-yielding biomass feedstock of desirable quality. Switchgrass (Panicum virgatum L.) is one of the primary feedstock candidates in North America,
Biosolids Amendment and Harvest Frequency Affect Nitrogen Use Dynamics of Switchgrass Grown for Biofuel Production
Nitrogen use efficiency (NUE) is a crucial index for developing sustainable bioenergy cropping systems. The objective of this study was to examine switchgrass (Panicum virgatum L.) NUE by using
Methods for estimating temperature sensitivity of soil organic matter based on incubation data: A comparative evaluation
Although the temperature sensitivity (Q10) of soil organic matter (SOM) decomposition has been widely studied, the estimate substantially depends on the methods used with specific assumptions. Here we compared
Indirect influences of a major drought on leaf litter quality and decomposition in a southwestern stream
Climate models predict that the southwestern United States will experience an increase in drought frequency and intensity with global climate change. We tested the hypothesis that leaf litter produced
Tree genotype mediates covariance among communities from microbes to lichens and arthropods
Community genetics studies frequently focus on individual communities associated with individual plant genotypes, but little is known about the genetically based relationships among taxonomically and spatially disparate communities. We
Nitrogen Removal by Stormwater Management Structures: A Data Synthesis
A comprehensive synthesis of data from empirically based published studies and a widely used stormwater best management practice (BMP) database were used to assess the variability in nitrogen (N)
Growth maximization trumps maintenance of leaf conductance in the tallest angiosperm
Structural and physiological changes that occur as trees grow taller are associated with increased hydraulic constraints on leaf gas exchange, yet it is unclear if leaf-level constraints influence whole-tree
Spatially explicit estimation of aboveground boreal forest biomass in the Yukon River Basin, Alaska
Quantification of aboveground biomass (AGB) in Alaska’s boreal forest is essential to the accurate evaluation of terrestrial carbon stocks and dynamics in northern high-latitude ecosystems. Our goal was to
Modeling climate and fuel reduction impacts on mixed-conifer forest carbon stocks in the Sierra Nevada, California
Quantifying the impacts of changing climatic conditions on forest growth is integral to estimating future forest carbon balance. We used a growth-and-yield model, modified for climate sensitivity, to quantify
Quantitative Microbial Ecology Through Stable Isotope Probing
Bacteria grow and transform elements at different rates, and as yet, quantifying this variation in the environment is difficult. Determining isotope enrichment with fine taxonomic resolution after exposure to
Nitrogen inputs and losses in response to chronic CO2 exposure in a subtropical oak woodland
Rising atmospheric CO2 concentrations may alter the nitrogen (N) content of ecosystems by changing N inputs and N losses, but responses vary in field experiments, possibly because multiple mechanisms
Estimated stocks of circumpolar permafrost carbon with quantified uncertainty ranges and identified data gaps
Soils and other unconsolidated deposits in the northern circumpolar permafrost region store large amounts of soil organic carbon (SOC). This SOC is potentially vulnerable to remobilization following soil warming
Accelerated microbial turnover but constant growth efficiency with warming in soil
Rising temperatures are expected to reduce global soil carbon (C) stocks, driving a positive feedback to climate change1, 2, 3. However, the mechanisms underlying this prediction are not well
Evapotranspiration comparisons between eddy covariance measurements and meteorological and remote-sensing-based models in disturbed ponderosa pine forests
Evapotranspiration (ET) comprises a major portion of the water budget in forests, yet few studies have measured or estimated ET in semi-arid, high-elevation ponderosa pine forests of the south-western
Ecogeomorphic feedbacks in regrowth of travertine step-pool morphology after dam decomissioning, Fossil Creek, Arizona
The linkages between fluvial geomorphology and aquatic ecosystems are commonly conceptualized as a one-way causal chain inwhich geomorphic processes create the physical template for ecological dynamics. In streams with
Temporal variability is a personalized feature of the human microbiome
Background It is now apparent that the complex microbial communities found on and in the human body vary across individuals. What has largely been missing from previous studies is
Greater ecosystem carbon in the Mojave Desert after ten years exposure to elevated CO2
Carbon dioxide is the main greenhouse gas inducing climate change. Increased global CO2 emissions, estimated at 8.4 Pg C yr−1 at present, have accelerated from 1% yr−1during 1990–1999 to
High carbon use efficiency in soil microbial communities is related to balanced growth, not storage compound synthesis
The efficiency with which microbes use substrate (Carbon Use Efficiency or CUE) to make new microbial biomass is an important variable in soil and ecosystem C cycling models. It
Shifts of tundra bacterial and archaeal communities along a permafrost thaw gradient in Alaska
Understanding the response of permafrost microbial communities to climate warming is crucial for evaluating ecosystem feedbacks to global change. This study investigated soil bacterial and archaeal communities by Illumina
Convergence of soil nitrogen isotopes across global climate gradients
Quantifying global patterns of terrestrial nitrogen (N) cycling is central to predicting future patterns of primary productivity, carbon sequestration, nutrient fluxes to aquatic systems, and climate forcing. With limited direct measures
Leaf litter quality affects aquatic insect emergence: contrasting patterns from two foundation trees
Reciprocal subsidies between rivers and terrestrial habitats are common where terrestrial leaf litter provides energy to aquatic invertebrates while emerging aquatic insects provide energy to terrestrial predators (e.g., birds,
Effects of travertine and flow on leaf retention in Fossil Creek, Ariona
Leaf retention is important in transferring energy from riparian trees to stream food webs. Retention increases with geomorphic complexity such as substrate coarseness, sinuosity, and the presence of debris
Closely Related Tree Species Differentially Influence the Transfer of Carbon and Nitrogen from Leaf Litter Up the Aquatic Food Web
Decomposing leaf litter in streams provides habitat and nutrition for aquatic insects. Despite large differences in the nutritional qualities of litter among different plant species, their effects on aquatic
Quantifying the timescales over which exogenous and endogenous conditions affect soil respiration
Understanding how exogenous and endogenous factors and above-ground-below-ground linkages modulate carbon dynamics is difficult because of the influences of antecedent conditions. For example, there are variable lags between above-ground
Linking Biodiversity and Ecosystem Services: Current Uncertainties and the Necessary Next Steps
Understanding when biodiversity conservation and ecosystem-service maintenance are compatible is needed within the Intergovernmental Platform on Biodiversity and Ecosystem Services (IPBES). Here, we evaluate current understanding and uncertainties of
Exercise conditioning decreases downstream movement of pond-reared razorback suckers released into a stream environment
Despite augmentation stocking efforts, wild populations of razorback suckers (Xyrauchen texanus) continue to decline. Endangered razorback suckers are commonly raised in off-channel ponds until maturity (approximately 300 mm TL)
Old soil carbon losses increase with ecosystem respiration in experimentally thawed tundra
Old soil carbon (C) respired to the atmosphere as a result of permafrost thaw has the potential to become a large positive feedback to climate change. As permafrost thaws,
A simplified, data-constrained approach to estimate the permafrost carbon–climate feedback
We present an approach to estimate the feedback from large-scale thawing of permafrost soils using a simplified, data-constrained model that combines three elements: soil carbon (C) maps and profiles


